Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-180]:
1j8ua_PU0_1-180
CI=2.90


[181-293]:
1j8ua_PU0_181-293
CI=2.74


[294-307 ]:
1j8ua_PU0_294-307
CI=1.85


Level 1
PU
Molecule needs Java 1.4 Structure


[1-60]:
1j8ua_PU1_1-60
CI=0.85


[61-108]:
1j8ua_PU1_61-108
CI=1.15


[109-180]:
1j8ua_PU1_109-180
CI=2.61


[181-293]:
1j8ua_PU1_181-293
CI=2.74


[294-307 ]:
1j8ua_PU1_294-307
CI=1.85


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j8ua_PU2_1-18
CI=0.40


[19-41]:
1j8ua_PU2_19-41
CI=0.81


[42-60]:
1j8ua_PU2_42-60
CI=0.20


[61-108]:
1j8ua_PU2_61-108
CI=1.15


[109-180]:
1j8ua_PU2_109-180
CI=2.61


[181-293]:
1j8ua_PU2_181-293
CI=2.74


[294-307 ]:
1j8ua_PU2_294-307
CI=1.85


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j8ua_PU3_1-18
CI=0.40


[19-41]:
1j8ua_PU3_19-41
CI=0.81


[42-60]:
1j8ua_PU3_42-60
CI=0.20


[61-108]:
1j8ua_PU3_61-108
CI=1.15


[109-180]:
1j8ua_PU3_109-180
CI=2.61


[181-204]:
1j8ua_PU3_181-204
CI=0.46


[205-274]:
1j8ua_PU3_205-274
CI=2.87


[275-293]:
1j8ua_PU3_275-293
CI=0.00


[294-307 ]:
1j8ua_PU3_294-307
CI=1.85


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j8ua_PU4_1-18
CI=0.40


[19-41]:
1j8ua_PU4_19-41
CI=0.81


[42-60]:
1j8ua_PU4_42-60
CI=0.20


[61-108]:
1j8ua_PU4_61-108
CI=1.15


[109-148]:
1j8ua_PU4_109-148
CI=2.38


[149-180]:
1j8ua_PU4_149-180
CI=1.18


[181-204]:
1j8ua_PU4_181-204
CI=0.46


[205-274]:
1j8ua_PU4_205-274
CI=2.87


[275-293]:
1j8ua_PU4_275-293
CI=0.00


[294-307 ]:
1j8ua_PU4_294-307
CI=1.85


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j8ua_PU5_1-18
CI=0.40


[19-41]:
1j8ua_PU5_19-41
CI=0.81


[42-60]:
1j8ua_PU5_42-60
CI=0.20


[61-108]:
1j8ua_PU5_61-108
CI=1.15


[109-126]:
1j8ua_PU5_109-126
CI=1.53


[127-148]:
1j8ua_PU5_127-148
CI=0.85


[149-180]:
1j8ua_PU5_149-180
CI=1.18


[181-204]:
1j8ua_PU5_181-204
CI=0.46


[205-274]:
1j8ua_PU5_205-274
CI=2.87


[275-293]:
1j8ua_PU5_275-293
CI=0.00


[294-307 ]:
1j8ua_PU5_294-307
CI=1.85


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j8ua_PU6_1-18
CI=0.40


[19-41]:
1j8ua_PU6_19-41
CI=0.81


[42-60]:
1j8ua_PU6_42-60
CI=0.20


[61-80]:
1j8ua_PU6_61-80
CI=0.00


[81-108]:
1j8ua_PU6_81-108
CI=0.81


[109-126]:
1j8ua_PU6_109-126
CI=1.53


[127-148]:
1j8ua_PU6_127-148
CI=0.85


[149-180]:
1j8ua_PU6_149-180
CI=1.18


[181-204]:
1j8ua_PU6_181-204
CI=0.46


[205-274]:
1j8ua_PU6_205-274
CI=2.87


[275-293]:
1j8ua_PU6_275-293
CI=0.00


[294-307 ]:
1j8ua_PU6_294-307
CI=1.85


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-18]:
1j8ua_PU_1-18
CI=0.40


[19-41]:
1j8ua_PU_19-41
CI=0.81


[42-60]:
1j8ua_PU_42-60
CI=0.20


[61-80]:
1j8ua_PU_61-80
CI=0.00


[81-108]:
1j8ua_PU_81-108
CI=0.81


[109-126]:
1j8ua_PU_109-126
CI=1.53


[127-148]:
1j8ua_PU_127-148
CI=0.85


[149-180]:
1j8ua_PU_149-180
CI=1.18


[181-204]:
1j8ua_PU_181-204
CI=0.46


[205-226]:
1j8ua_PU_205-226
CI=1.44


[227-244]:
1j8ua_PU_227-244
CI=0.51


[245-274]:
1j8ua_PU_245-274
CI=1.78


[275-293]:
1j8ua_PU_275-293
CI=0.00


[294-307 ]:
1j8ua_PU_294-307
CI=1.85