Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-185]:
1j9la_PU0_1-185
CI=5.26


[186-202]:
1j9la_PU0_186-202
CI=2.21


[203-247 ]:
1j9la_PU0_203-247
CI=0.41


Level 1
PU
Molecule needs Java 1.4 Structure


[1-185]:
1j9la_PU1_1-185
CI=5.26


[186-202]:
1j9la_PU1_186-202
CI=2.21


[203-228]:
1j9la_PU1_203-228
CI=0.71


[229-247 ]:
1j9la_PU1_229-247
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-87]:
1j9la_PU2_1-87
CI=4.18


[88-185]:
1j9la_PU2_88-185
CI=3.50


[186-202]:
1j9la_PU2_186-202
CI=2.21


[203-228]:
1j9la_PU2_203-228
CI=0.71


[229-247 ]:
1j9la_PU2_229-247
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-87]:
1j9la_PU3_1-87
CI=4.18


[88-140]:
1j9la_PU3_88-140
CI=3.49


[141-156]:
1j9la_PU3_141-156
CI=0.00


[157-185]:
1j9la_PU3_157-185
CI=0.06


[186-202]:
1j9la_PU3_186-202
CI=2.21


[203-228]:
1j9la_PU3_203-228
CI=0.71


[229-247 ]:
1j9la_PU3_229-247
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-71]:
1j9la_PU4_1-71
CI=4.14


[72-87]:
1j9la_PU4_72-87
CI=0.56


[88-140]:
1j9la_PU4_88-140
CI=3.49


[141-156]:
1j9la_PU4_141-156
CI=0.00


[157-185]:
1j9la_PU4_157-185
CI=0.06


[186-202]:
1j9la_PU4_186-202
CI=2.21


[203-228]:
1j9la_PU4_203-228
CI=0.71


[229-247 ]:
1j9la_PU4_229-247
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-33]:
1j9la_PU5_1-33
CI=2.41


[34-71]:
1j9la_PU5_34-71
CI=2.51


[72-87]:
1j9la_PU5_72-87
CI=0.56


[88-140]:
1j9la_PU5_88-140
CI=3.49


[141-156]:
1j9la_PU5_141-156
CI=0.00


[157-185]:
1j9la_PU5_157-185
CI=0.06


[186-202]:
1j9la_PU5_186-202
CI=2.21


[203-228]:
1j9la_PU5_203-228
CI=0.71


[229-247 ]:
1j9la_PU5_229-247
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-33]:
1j9la_PU6_1-33
CI=2.41


[34-50]:
1j9la_PU6_34-50
CI=0.00


[51-71]:
1j9la_PU6_51-71
CI=2.15


[72-87]:
1j9la_PU6_72-87
CI=0.56


[88-140]:
1j9la_PU6_88-140
CI=3.49


[141-156]:
1j9la_PU6_141-156
CI=0.00


[157-185]:
1j9la_PU6_157-185
CI=0.06


[186-202]:
1j9la_PU6_186-202
CI=2.21


[203-228]:
1j9la_PU6_203-228
CI=0.71


[229-247 ]:
1j9la_PU6_229-247
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-33]:
1j9la_PU7_1-33
CI=2.41


[34-50]:
1j9la_PU7_34-50
CI=0.00


[51-71]:
1j9la_PU7_51-71
CI=2.15


[72-87]:
1j9la_PU7_72-87
CI=0.56


[88-121]:
1j9la_PU7_88-121
CI=1.01


[122-140]:
1j9la_PU7_122-140
CI=0.78


[141-156]:
1j9la_PU7_141-156
CI=0.00


[157-185]:
1j9la_PU7_157-185
CI=0.06


[186-202]:
1j9la_PU7_186-202
CI=2.21


[203-228]:
1j9la_PU7_203-228
CI=0.71


[229-247 ]:
1j9la_PU7_229-247
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-33]:
1j9la_PU8_1-33
CI=2.41


[34-50]:
1j9la_PU8_34-50
CI=0.00


[51-71]:
1j9la_PU8_51-71
CI=2.15


[72-87]:
1j9la_PU8_72-87
CI=0.56


[88-104]:
1j9la_PU8_88-104
CI=0.00


[105-121]:
1j9la_PU8_105-121
CI=0.11


[122-140]:
1j9la_PU8_122-140
CI=0.78


[141-156]:
1j9la_PU8_141-156
CI=0.00


[157-185]:
1j9la_PU8_157-185
CI=0.06


[186-202]:
1j9la_PU8_186-202
CI=2.21


[203-228]:
1j9la_PU8_203-228
CI=0.71


[229-247 ]:
1j9la_PU8_229-247
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1j9la_PU_1-17
CI=0.64


[18-33]:
1j9la_PU_18-33
CI=0.44


[34-50]:
1j9la_PU_34-50
CI=0.00


[51-71]:
1j9la_PU_51-71
CI=2.15


[72-87]:
1j9la_PU_72-87
CI=0.56


[88-104]:
1j9la_PU_88-104
CI=0.00


[105-121]:
1j9la_PU_105-121
CI=0.11


[122-140]:
1j9la_PU_122-140
CI=0.78


[141-156]:
1j9la_PU_141-156
CI=0.00


[157-185]:
1j9la_PU_157-185
CI=0.06


[186-202]:
1j9la_PU_186-202
CI=2.21


[203-228]:
1j9la_PU_203-228
CI=0.71


[229-247 ]:
1j9la_PU_229-247
CI=0.00