Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-130]:
1jdph_PU0_1-130
CI=4.02


[131-273]:
1jdph_PU0_131-273
CI=2.96


[274-396 ]:
1jdph_PU0_274-396
CI=2.67


Level 1
PU
Molecule needs Java 1.4 Structure


[1-130]:
1jdph_PU1_1-130
CI=4.02


[131-273]:
1jdph_PU1_131-273
CI=2.96


[274-363]:
1jdph_PU1_274-363
CI=2.03


[364-396 ]:
1jdph_PU1_364-396
CI=3.24


Level 2
PU
Molecule needs Java 1.4 Structure


[1-130]:
1jdph_PU2_1-130
CI=4.02


[131-273]:
1jdph_PU2_131-273
CI=2.96


[274-312]:
1jdph_PU2_274-312
CI=0.71


[313-363]:
1jdph_PU2_313-363
CI=2.52


[364-396 ]:
1jdph_PU2_364-396
CI=3.24


Level 3
PU
Molecule needs Java 1.4 Structure


[1-130]:
1jdph_PU3_1-130
CI=4.02


[131-212]:
1jdph_PU3_131-212
CI=2.89


[213-273]:
1jdph_PU3_213-273
CI=1.92


[274-312]:
1jdph_PU3_274-312
CI=0.71


[313-363]:
1jdph_PU3_313-363
CI=2.52


[364-396 ]:
1jdph_PU3_364-396
CI=3.24


Level 4
PU
Molecule needs Java 1.4 Structure


[1-55]:
1jdph_PU4_1-55
CI=2.49


[56-130]:
1jdph_PU4_56-130
CI=3.79


[131-212]:
1jdph_PU4_131-212
CI=2.89


[213-273]:
1jdph_PU4_213-273
CI=1.92


[274-312]:
1jdph_PU4_274-312
CI=0.71


[313-363]:
1jdph_PU4_313-363
CI=2.52


[364-396 ]:
1jdph_PU4_364-396
CI=3.24


Level 5
PU
Molecule needs Java 1.4 Structure


[1-55]:
1jdph_PU5_1-55
CI=2.49


[56-130]:
1jdph_PU5_56-130
CI=3.79


[131-212]:
1jdph_PU5_131-212
CI=2.89


[213-273]:
1jdph_PU5_213-273
CI=1.92


[274-312]:
1jdph_PU5_274-312
CI=0.71


[313-342]:
1jdph_PU5_313-342
CI=1.19


[343-363]:
1jdph_PU5_343-363
CI=3.32


[364-396 ]:
1jdph_PU5_364-396
CI=3.24


Level 6
PU
Molecule needs Java 1.4 Structure


[1-55]:
1jdph_PU6_1-55
CI=2.49


[56-78]:
1jdph_PU6_56-78
CI=0.64


[79-130]:
1jdph_PU6_79-130
CI=4.19


[131-212]:
1jdph_PU6_131-212
CI=2.89


[213-273]:
1jdph_PU6_213-273
CI=1.92


[274-312]:
1jdph_PU6_274-312
CI=0.71


[313-342]:
1jdph_PU6_313-342
CI=1.19


[343-363]:
1jdph_PU6_343-363
CI=3.32


[364-396 ]:
1jdph_PU6_364-396
CI=3.24


Level 7
PU
Molecule needs Java 1.4 Structure


[1-55]:
1jdph_PU7_1-55
CI=2.49


[56-78]:
1jdph_PU7_56-78
CI=0.64


[79-130]:
1jdph_PU7_79-130
CI=4.19


[131-148]:
1jdph_PU7_131-148
CI=0.10


[149-212]:
1jdph_PU7_149-212
CI=2.74


[213-273]:
1jdph_PU7_213-273
CI=1.92


[274-312]:
1jdph_PU7_274-312
CI=0.71


[313-342]:
1jdph_PU7_313-342
CI=1.19


[343-363]:
1jdph_PU7_343-363
CI=3.32


[364-396 ]:
1jdph_PU7_364-396
CI=3.24


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-55]:
1jdph_PU_1-55
CI=2.49


[56-78]:
1jdph_PU_56-78
CI=0.64


[79-130]:
1jdph_PU_79-130
CI=4.19


[131-148]:
1jdph_PU_131-148
CI=0.10


[149-212]:
1jdph_PU_149-212
CI=2.74


[213-234]:
1jdph_PU_213-234
CI=0.09


[235-273]:
1jdph_PU_235-273
CI=1.77


[274-312]:
1jdph_PU_274-312
CI=0.71


[313-342]:
1jdph_PU_313-342
CI=1.19


[343-363]:
1jdph_PU_343-363
CI=3.32


[364-396 ]:
1jdph_PU_364-396
CI=3.24