Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1jer0_PU0_1-52
CI=1.70


[53-68]:
1jer0_PU0_53-68
CI=0.22


[69-110 ]:
1jer0_PU0_69-110
CI=1.78


Level 1
PU
Molecule needs Java 1.4 Structure


[1-52]:
1jer0_PU1_1-52
CI=1.70


[53-68]:
1jer0_PU1_53-68
CI=0.22


[69-88]:
1jer0_PU1_69-88
CI=0.09


[89-110 ]:
1jer0_PU1_89-110
CI=0.69


Level 2
PU
Molecule needs Java 1.4 Structure


[1-35]:
1jer0_PU2_1-35
CI=0.70


[36-52]:
1jer0_PU2_36-52
CI=0.32


[53-68]:
1jer0_PU2_53-68
CI=0.22


[69-88]:
1jer0_PU2_69-88
CI=0.09


[89-110 ]:
1jer0_PU2_89-110
CI=0.69


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jer0_PU_1-17
CI=0.21


[18-35]:
1jer0_PU_18-35
CI=0.00


[36-52]:
1jer0_PU_36-52
CI=0.32


[53-68]:
1jer0_PU_53-68
CI=0.22


[69-88]:
1jer0_PU_69-88
CI=0.09


[89-110 ]:
1jer0_PU_89-110
CI=0.69