Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU0_1-17
CI=0.00


[18-123]:
1jfra_PU0_18-123
CI=4.65


[124-260 ]:
1jfra_PU0_124-260
CI=4.65


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU1_1-17
CI=0.00


[18-123]:
1jfra_PU1_18-123
CI=4.65


[124-212]:
1jfra_PU1_124-212
CI=5.16


[213-260 ]:
1jfra_PU1_213-260
CI=1.27


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU2_1-17
CI=0.00


[18-123]:
1jfra_PU2_18-123
CI=4.65


[124-212]:
1jfra_PU2_124-212
CI=5.16


[213-239]:
1jfra_PU2_213-239
CI=1.04


[240-260 ]:
1jfra_PU2_240-260
CI=1.06


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU3_1-17
CI=0.00


[18-123]:
1jfra_PU3_18-123
CI=4.65


[124-165]:
1jfra_PU3_124-165
CI=4.40


[166-212]:
1jfra_PU3_166-212
CI=2.90


[213-239]:
1jfra_PU3_213-239
CI=1.04


[240-260 ]:
1jfra_PU3_240-260
CI=1.06


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU4_1-17
CI=0.00


[18-104]:
1jfra_PU4_18-104
CI=4.62


[105-123]:
1jfra_PU4_105-123
CI=0.98


[124-165]:
1jfra_PU4_124-165
CI=4.40


[166-212]:
1jfra_PU4_166-212
CI=2.90


[213-239]:
1jfra_PU4_213-239
CI=1.04


[240-260 ]:
1jfra_PU4_240-260
CI=1.06


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU5_1-17
CI=0.00


[18-86]:
1jfra_PU5_18-86
CI=4.36


[87-104]:
1jfra_PU5_87-104
CI=0.51


[105-123]:
1jfra_PU5_105-123
CI=0.98


[124-165]:
1jfra_PU5_124-165
CI=4.40


[166-212]:
1jfra_PU5_166-212
CI=2.90


[213-239]:
1jfra_PU5_213-239
CI=1.04


[240-260 ]:
1jfra_PU5_240-260
CI=1.06


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU6_1-17
CI=0.00


[18-50]:
1jfra_PU6_18-50
CI=2.13


[51-86]:
1jfra_PU6_51-86
CI=2.86


[87-104]:
1jfra_PU6_87-104
CI=0.51


[105-123]:
1jfra_PU6_105-123
CI=0.98


[124-165]:
1jfra_PU6_124-165
CI=4.40


[166-212]:
1jfra_PU6_166-212
CI=2.90


[213-239]:
1jfra_PU6_213-239
CI=1.04


[240-260 ]:
1jfra_PU6_240-260
CI=1.06


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU7_1-17
CI=0.00


[18-50]:
1jfra_PU7_18-50
CI=2.13


[51-68]:
1jfra_PU7_51-68
CI=0.51


[69-86]:
1jfra_PU7_69-86
CI=1.02


[87-104]:
1jfra_PU7_87-104
CI=0.51


[105-123]:
1jfra_PU7_105-123
CI=0.98


[124-165]:
1jfra_PU7_124-165
CI=4.40


[166-212]:
1jfra_PU7_166-212
CI=2.90


[213-239]:
1jfra_PU7_213-239
CI=1.04


[240-260 ]:
1jfra_PU7_240-260
CI=1.06


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU8_1-17
CI=0.00


[18-50]:
1jfra_PU8_18-50
CI=2.13


[51-68]:
1jfra_PU8_51-68
CI=0.51


[69-86]:
1jfra_PU8_69-86
CI=1.02


[87-104]:
1jfra_PU8_87-104
CI=0.51


[105-123]:
1jfra_PU8_105-123
CI=0.98


[124-165]:
1jfra_PU8_124-165
CI=4.40


[166-191]:
1jfra_PU8_166-191
CI=0.79


[192-212]:
1jfra_PU8_192-212
CI=0.00


[213-239]:
1jfra_PU8_213-239
CI=1.04


[240-260 ]:
1jfra_PU8_240-260
CI=1.06


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU9_1-17
CI=0.00


[18-34]:
1jfra_PU9_18-34
CI=0.00


[35-50]:
1jfra_PU9_35-50
CI=0.00


[51-68]:
1jfra_PU9_51-68
CI=0.51


[69-86]:
1jfra_PU9_69-86
CI=1.02


[87-104]:
1jfra_PU9_87-104
CI=0.51


[105-123]:
1jfra_PU9_105-123
CI=0.98


[124-165]:
1jfra_PU9_124-165
CI=4.40


[166-191]:
1jfra_PU9_166-191
CI=0.79


[192-212]:
1jfra_PU9_192-212
CI=0.00


[213-239]:
1jfra_PU9_213-239
CI=1.04


[240-260 ]:
1jfra_PU9_240-260
CI=1.06


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jfra_PU_1-17
CI=0.00


[18-34]:
1jfra_PU_18-34
CI=0.00


[35-50]:
1jfra_PU_35-50
CI=0.00


[51-68]:
1jfra_PU_51-68
CI=0.51


[69-86]:
1jfra_PU_69-86
CI=1.02


[87-104]:
1jfra_PU_87-104
CI=0.51


[105-123]:
1jfra_PU_105-123
CI=0.98


[124-141]:
1jfra_PU_124-141
CI=1.12


[142-165]:
1jfra_PU_142-165
CI=0.94


[166-191]:
1jfra_PU_166-191
CI=0.79


[192-212]:
1jfra_PU_192-212
CI=0.00


[213-239]:
1jfra_PU_213-239
CI=1.04


[240-260 ]:
1jfra_PU_240-260
CI=1.06