Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-132]:
1jjfa_PU0_1-132
CI=3.57


[133-255 ]:
1jjfa_PU0_133-255
CI=4.34


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU1_1-17
CI=0.00


[18-132]:
1jjfa_PU1_18-132
CI=3.83


[133-255 ]:
1jjfa_PU1_133-255
CI=4.34


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU2_1-17
CI=0.00


[18-58]:
1jjfa_PU2_18-58
CI=2.02


[59-89]:
1jjfa_PU2_59-89
CI=1.09


[90-132]:
1jjfa_PU2_90-132
CI=1.44


[133-255 ]:
1jjfa_PU2_133-255
CI=4.34


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU3_1-17
CI=0.00


[18-41]:
1jjfa_PU3_18-41
CI=2.37


[42-58]:
1jjfa_PU3_42-58
CI=0.00


[59-89]:
1jjfa_PU3_59-89
CI=1.09


[90-132]:
1jjfa_PU3_90-132
CI=1.44


[133-255 ]:
1jjfa_PU3_133-255
CI=4.34


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU4_1-17
CI=0.00


[18-41]:
1jjfa_PU4_18-41
CI=2.37


[42-58]:
1jjfa_PU4_42-58
CI=0.00


[59-89]:
1jjfa_PU4_59-89
CI=1.09


[90-116]:
1jjfa_PU4_90-116
CI=1.92


[117-132]:
1jjfa_PU4_117-132
CI=0.11


[133-255 ]:
1jjfa_PU4_133-255
CI=4.34


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU5_1-17
CI=0.00


[18-41]:
1jjfa_PU5_18-41
CI=2.37


[42-58]:
1jjfa_PU5_42-58
CI=0.00


[59-89]:
1jjfa_PU5_59-89
CI=1.09


[90-116]:
1jjfa_PU5_90-116
CI=1.92


[117-132]:
1jjfa_PU5_117-132
CI=0.11


[133-190]:
1jjfa_PU5_133-190
CI=4.33


[191-255 ]:
1jjfa_PU5_191-255
CI=1.93


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU6_1-17
CI=0.00


[18-41]:
1jjfa_PU6_18-41
CI=2.37


[42-58]:
1jjfa_PU6_42-58
CI=0.00


[59-89]:
1jjfa_PU6_59-89
CI=1.09


[90-116]:
1jjfa_PU6_90-116
CI=1.92


[117-132]:
1jjfa_PU6_117-132
CI=0.11


[133-190]:
1jjfa_PU6_133-190
CI=4.33


[191-239]:
1jjfa_PU6_191-239
CI=2.27


[240-255 ]:
1jjfa_PU6_240-255
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU7_1-17
CI=0.00


[18-41]:
1jjfa_PU7_18-41
CI=2.37


[42-58]:
1jjfa_PU7_42-58
CI=0.00


[59-89]:
1jjfa_PU7_59-89
CI=1.09


[90-116]:
1jjfa_PU7_90-116
CI=1.92


[117-132]:
1jjfa_PU7_117-132
CI=0.11


[133-173]:
1jjfa_PU7_133-173
CI=5.12


[174-190]:
1jjfa_PU7_174-190
CI=0.11


[191-239]:
1jjfa_PU7_191-239
CI=2.27


[240-255 ]:
1jjfa_PU7_240-255
CI=0.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU8_1-17
CI=0.00


[18-41]:
1jjfa_PU8_18-41
CI=2.37


[42-58]:
1jjfa_PU8_42-58
CI=0.00


[59-89]:
1jjfa_PU8_59-89
CI=1.09


[90-116]:
1jjfa_PU8_90-116
CI=1.92


[117-132]:
1jjfa_PU8_117-132
CI=0.11


[133-173]:
1jjfa_PU8_133-173
CI=5.12


[174-190]:
1jjfa_PU8_174-190
CI=0.11


[191-220]:
1jjfa_PU8_191-220
CI=0.55


[221-239]:
1jjfa_PU8_221-239
CI=0.20


[240-255 ]:
1jjfa_PU8_240-255
CI=0.22


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jjfa_PU_1-17
CI=0.00


[18-41]:
1jjfa_PU_18-41
CI=2.37


[42-58]:
1jjfa_PU_42-58
CI=0.00


[59-89]:
1jjfa_PU_59-89
CI=1.09


[90-116]:
1jjfa_PU_90-116
CI=1.92


[117-132]:
1jjfa_PU_117-132
CI=0.11


[133-149]:
1jjfa_PU_133-149
CI=0.97


[150-173]:
1jjfa_PU_150-173
CI=1.01


[174-190]:
1jjfa_PU_174-190
CI=0.11


[191-220]:
1jjfa_PU_191-220
CI=0.55


[221-239]:
1jjfa_PU_221-239
CI=0.20


[240-255 ]:
1jjfa_PU_240-255
CI=0.22