Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-121]:
1jk3a_PU0_1-121
CI=4.65


[122-158 ]:
1jk3a_PU0_122-158
CI=1.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-59]:
1jk3a_PU1_1-59
CI=2.32


[60-75]:
1jk3a_PU1_60-75
CI=1.39


[76-121]:
1jk3a_PU1_76-121
CI=3.67


[122-158 ]:
1jk3a_PU1_122-158
CI=1.18


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1jk3a_PU2_1-16
CI=0.00


[17-41]:
1jk3a_PU2_17-41
CI=0.07


[42-59]:
1jk3a_PU2_42-59
CI=0.00


[60-75]:
1jk3a_PU2_60-75
CI=1.39


[76-121]:
1jk3a_PU2_76-121
CI=3.67


[122-158 ]:
1jk3a_PU2_122-158
CI=1.18


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1jk3a_PU3_1-16
CI=0.00


[17-41]:
1jk3a_PU3_17-41
CI=0.07


[42-59]:
1jk3a_PU3_42-59
CI=0.00


[60-75]:
1jk3a_PU3_60-75
CI=1.39


[76-121]:
1jk3a_PU3_76-121
CI=3.67


[122-142]:
1jk3a_PU3_122-142
CI=0.90


[143-158 ]:
1jk3a_PU3_143-158
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-16]:
1jk3a_PU_1-16
CI=0.00


[17-41]:
1jk3a_PU_17-41
CI=0.07


[42-59]:
1jk3a_PU_42-59
CI=0.00


[60-75]:
1jk3a_PU_60-75
CI=1.39


[76-96]:
1jk3a_PU_76-96
CI=2.41


[97-121]:
1jk3a_PU_97-121
CI=1.06


[122-142]:
1jk3a_PU_122-142
CI=0.90


[143-158 ]:
1jk3a_PU_143-158
CI=0.00