Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-51]:
1josa_PU0_1-51
CI=3.50


[52-85]:
1josa_PU0_52-85
CI=0.39


[86-100 ]:
1josa_PU0_86-100
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-51]:
1josa_PU1_1-51
CI=3.50


[52-68]:
1josa_PU1_52-68
CI=0.11


[69-85]:
1josa_PU1_69-85
CI=0.65


[86-100 ]:
1josa_PU1_86-100
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1josa_PU_1-20
CI=0.00


[21-51]:
1josa_PU_21-51
CI=3.01


[52-68]:
1josa_PU_52-68
CI=0.11


[69-85]:
1josa_PU_69-85
CI=0.65


[86-100 ]:
1josa_PU_86-100
CI=0.00