Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-36]:
1jr8a_PU0_1-36
CI=0.10


[37-63]:
1jr8a_PU0_37-63
CI=1.11


[64-105 ]:
1jr8a_PU0_64-105
CI=1.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1jr8a_PU1_1-20
CI=0.00


[21-36]:
1jr8a_PU1_21-36
CI=0.11


[37-63]:
1jr8a_PU1_37-63
CI=1.11


[64-105 ]:
1jr8a_PU1_64-105
CI=1.61


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1jr8a_PU_1-20
CI=0.00


[21-36]:
1jr8a_PU_21-36
CI=0.11


[37-63]:
1jr8a_PU_37-63
CI=1.11


[64-80]:
1jr8a_PU_64-80
CI=0.98


[81-105 ]:
1jr8a_PU_81-105
CI=0.81