Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU0_1-19
CI=1.47


[20-206]:
1juha_PU0_20-206
CI=5.42


[207-334 ]:
1juha_PU0_207-334
CI=5.48


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU1_1-19
CI=1.47


[20-206]:
1juha_PU1_20-206
CI=5.42


[207-248]:
1juha_PU1_207-248
CI=3.03


[249-309]:
1juha_PU1_249-309
CI=4.99


[310-334 ]:
1juha_PU1_310-334
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU2_1-19
CI=1.47


[20-169]:
1juha_PU2_20-169
CI=5.40


[170-206]:
1juha_PU2_170-206
CI=1.81


[207-248]:
1juha_PU2_207-248
CI=3.03


[249-309]:
1juha_PU2_249-309
CI=4.99


[310-334 ]:
1juha_PU2_310-334
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU3_1-19
CI=1.47


[20-169]:
1juha_PU3_20-169
CI=5.40


[170-187]:
1juha_PU3_170-187
CI=1.24


[188-206]:
1juha_PU3_188-206
CI=1.77


[207-248]:
1juha_PU3_207-248
CI=3.03


[249-309]:
1juha_PU3_249-309
CI=4.99


[310-334 ]:
1juha_PU3_310-334
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU4_1-19
CI=1.47


[20-53]:
1juha_PU4_20-53
CI=2.98


[54-125]:
1juha_PU4_54-125
CI=5.38


[126-169]:
1juha_PU4_126-169
CI=0.56


[170-187]:
1juha_PU4_170-187
CI=1.24


[188-206]:
1juha_PU4_188-206
CI=1.77


[207-248]:
1juha_PU4_207-248
CI=3.03


[249-309]:
1juha_PU4_249-309
CI=4.99


[310-334 ]:
1juha_PU4_310-334
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU5_1-19
CI=1.47


[20-53]:
1juha_PU5_20-53
CI=2.98


[54-125]:
1juha_PU5_54-125
CI=5.38


[126-152]:
1juha_PU5_126-152
CI=0.07


[153-169]:
1juha_PU5_153-169
CI=0.43


[170-187]:
1juha_PU5_170-187
CI=1.24


[188-206]:
1juha_PU5_188-206
CI=1.77


[207-248]:
1juha_PU5_207-248
CI=3.03


[249-309]:
1juha_PU5_249-309
CI=4.99


[310-334 ]:
1juha_PU5_310-334
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU6_1-19
CI=1.47


[20-36]:
1juha_PU6_20-36
CI=1.85


[37-53]:
1juha_PU6_37-53
CI=1.31


[54-125]:
1juha_PU6_54-125
CI=5.38


[126-152]:
1juha_PU6_126-152
CI=0.07


[153-169]:
1juha_PU6_153-169
CI=0.43


[170-187]:
1juha_PU6_170-187
CI=1.24


[188-206]:
1juha_PU6_188-206
CI=1.77


[207-248]:
1juha_PU6_207-248
CI=3.03


[249-309]:
1juha_PU6_249-309
CI=4.99


[310-334 ]:
1juha_PU6_310-334
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU7_1-19
CI=1.47


[20-36]:
1juha_PU7_20-36
CI=1.85


[37-53]:
1juha_PU7_37-53
CI=1.31


[54-125]:
1juha_PU7_54-125
CI=5.38


[126-152]:
1juha_PU7_126-152
CI=0.07


[153-169]:
1juha_PU7_153-169
CI=0.43


[170-187]:
1juha_PU7_170-187
CI=1.24


[188-206]:
1juha_PU7_188-206
CI=1.77


[207-223]:
1juha_PU7_207-223
CI=1.97


[224-248]:
1juha_PU7_224-248
CI=0.60


[249-309]:
1juha_PU7_249-309
CI=4.99


[310-334 ]:
1juha_PU7_310-334
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU8_1-19
CI=1.47


[20-36]:
1juha_PU8_20-36
CI=1.85


[37-53]:
1juha_PU8_37-53
CI=1.31


[54-77]:
1juha_PU8_54-77
CI=0.00


[78-103]:
1juha_PU8_78-103
CI=2.33


[104-125]:
1juha_PU8_104-125
CI=0.08


[126-152]:
1juha_PU8_126-152
CI=0.07


[153-169]:
1juha_PU8_153-169
CI=0.43


[170-187]:
1juha_PU8_170-187
CI=1.24


[188-206]:
1juha_PU8_188-206
CI=1.77


[207-223]:
1juha_PU8_207-223
CI=1.97


[224-248]:
1juha_PU8_224-248
CI=0.60


[249-309]:
1juha_PU8_249-309
CI=4.99


[310-334 ]:
1juha_PU8_310-334
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1juha_PU_1-19
CI=1.47


[20-36]:
1juha_PU_20-36
CI=1.85


[37-53]:
1juha_PU_37-53
CI=1.31


[54-77]:
1juha_PU_54-77
CI=0.00


[78-103]:
1juha_PU_78-103
CI=2.33


[104-125]:
1juha_PU_104-125
CI=0.08


[126-152]:
1juha_PU_126-152
CI=0.07


[153-169]:
1juha_PU_153-169
CI=0.43


[170-187]:
1juha_PU_170-187
CI=1.24


[188-206]:
1juha_PU_188-206
CI=1.77


[207-223]:
1juha_PU_207-223
CI=1.97


[224-248]:
1juha_PU_224-248
CI=0.60


[249-265]:
1juha_PU_249-265
CI=0.00


[266-281]:
1juha_PU_266-281
CI=2.19


[282-309]:
1juha_PU_282-309
CI=0.13


[310-334 ]:
1juha_PU_310-334
CI=0.00