Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-235]:
1jx4a_PU0_1-235
CI=3.46


[236-335 ]:
1jx4a_PU0_236-335
CI=4.11


Level 1
PU
Molecule needs Java 1.4 Structure


[1-164]:
1jx4a_PU1_1-164
CI=3.91


[165-227]:
1jx4a_PU1_165-227
CI=1.46


[228-235]:
1jx4a_PU1_228-235
CI=0.00


[236-335 ]:
1jx4a_PU1_236-335
CI=4.11


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jx4a_PU2_1-23
CI=0.17


[24-74]:
1jx4a_PU2_24-74
CI=3.85


[75-164]:
1jx4a_PU2_75-164
CI=2.53


[165-227]:
1jx4a_PU2_165-227
CI=1.46


[228-235]:
1jx4a_PU2_228-235
CI=0.00


[236-335 ]:
1jx4a_PU2_236-335
CI=4.11


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-23]:
1jx4a_PU_1-23
CI=0.17


[24-74]:
1jx4a_PU_24-74
CI=3.85


[75-111]:
1jx4a_PU_75-111
CI=1.53


[112-164]:
1jx4a_PU_112-164
CI=2.79


[165-227]:
1jx4a_PU_165-227
CI=1.46


[228-235]:
1jx4a_PU_228-235
CI=0.00


[236-335 ]:
1jx4a_PU_236-335
CI=4.11