Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-153]:
1jx6a_PU0_1-153
CI=2.77


[154-263]:
1jx6a_PU0_154-263
CI=4.14


[264-338 ]:
1jx6a_PU0_264-338
CI=2.25


Level 1
PU
Molecule needs Java 1.4 Structure


[1-153]:
1jx6a_PU1_1-153
CI=2.77


[154-263]:
1jx6a_PU1_154-263
CI=4.14


[264-288]:
1jx6a_PU1_264-288
CI=1.13


[289-311]:
1jx6a_PU1_289-311
CI=0.56


[312-338 ]:
1jx6a_PU1_312-338
CI=0.27


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jx6a_PU2_1-29
CI=0.39


[30-153]:
1jx6a_PU2_30-153
CI=3.04


[154-263]:
1jx6a_PU2_154-263
CI=4.14


[264-288]:
1jx6a_PU2_264-288
CI=1.13


[289-311]:
1jx6a_PU2_289-311
CI=0.56


[312-338 ]:
1jx6a_PU2_312-338
CI=0.27


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jx6a_PU3_1-29
CI=0.39


[30-93]:
1jx6a_PU3_30-93
CI=2.40


[94-153]:
1jx6a_PU3_94-153
CI=2.83


[154-263]:
1jx6a_PU3_154-263
CI=4.14


[264-288]:
1jx6a_PU3_264-288
CI=1.13


[289-311]:
1jx6a_PU3_289-311
CI=0.56


[312-338 ]:
1jx6a_PU3_312-338
CI=0.27


Level 4
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jx6a_PU4_1-29
CI=0.39


[30-93]:
1jx6a_PU4_30-93
CI=2.40


[94-153]:
1jx6a_PU4_94-153
CI=2.83


[154-210]:
1jx6a_PU4_154-210
CI=2.70


[211-263]:
1jx6a_PU4_211-263
CI=2.86


[264-288]:
1jx6a_PU4_264-288
CI=1.13


[289-311]:
1jx6a_PU4_289-311
CI=0.56


[312-338 ]:
1jx6a_PU4_312-338
CI=0.27


Level 5
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jx6a_PU5_1-29
CI=0.39


[30-48]:
1jx6a_PU5_30-48
CI=0.00


[49-65]:
1jx6a_PU5_49-65
CI=0.33


[66-93]:
1jx6a_PU5_66-93
CI=0.46


[94-153]:
1jx6a_PU5_94-153
CI=2.83


[154-210]:
1jx6a_PU5_154-210
CI=2.70


[211-263]:
1jx6a_PU5_211-263
CI=2.86


[264-288]:
1jx6a_PU5_264-288
CI=1.13


[289-311]:
1jx6a_PU5_289-311
CI=0.56


[312-338 ]:
1jx6a_PU5_312-338
CI=0.27


Level 6
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jx6a_PU6_1-29
CI=0.39


[30-48]:
1jx6a_PU6_30-48
CI=0.00


[49-65]:
1jx6a_PU6_49-65
CI=0.33


[66-93]:
1jx6a_PU6_66-93
CI=0.46


[94-131]:
1jx6a_PU6_94-131
CI=1.71


[132-153]:
1jx6a_PU6_132-153
CI=2.15


[154-210]:
1jx6a_PU6_154-210
CI=2.70


[211-263]:
1jx6a_PU6_211-263
CI=2.86


[264-288]:
1jx6a_PU6_264-288
CI=1.13


[289-311]:
1jx6a_PU6_289-311
CI=0.56


[312-338 ]:
1jx6a_PU6_312-338
CI=0.27


Level 7
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jx6a_PU7_1-29
CI=0.39


[30-48]:
1jx6a_PU7_30-48
CI=0.00


[49-65]:
1jx6a_PU7_49-65
CI=0.33


[66-93]:
1jx6a_PU7_66-93
CI=0.46


[94-131]:
1jx6a_PU7_94-131
CI=1.71


[132-153]:
1jx6a_PU7_132-153
CI=2.15


[154-170]:
1jx6a_PU7_154-170
CI=0.00


[171-210]:
1jx6a_PU7_171-210
CI=2.58


[211-263]:
1jx6a_PU7_211-263
CI=2.86


[264-288]:
1jx6a_PU7_264-288
CI=1.13


[289-311]:
1jx6a_PU7_289-311
CI=0.56


[312-338 ]:
1jx6a_PU7_312-338
CI=0.27


Level 8
PU
Molecule needs Java 1.4 Structure


[1-29]:
1jx6a_PU8_1-29
CI=0.39


[30-48]:
1jx6a_PU8_30-48
CI=0.00


[49-65]:
1jx6a_PU8_49-65
CI=0.33


[66-93]:
1jx6a_PU8_66-93
CI=0.46


[94-131]:
1jx6a_PU8_94-131
CI=1.71


[132-153]:
1jx6a_PU8_132-153
CI=2.15


[154-170]:
1jx6a_PU8_154-170
CI=0.00


[171-210]:
1jx6a_PU8_171-210
CI=2.58


[211-232]:
1jx6a_PU8_211-232
CI=0.43


[233-263]:
1jx6a_PU8_233-263
CI=1.77


[264-288]:
1jx6a_PU8_264-288
CI=1.13


[289-311]:
1jx6a_PU8_289-311
CI=0.56


[312-338 ]:
1jx6a_PU8_312-338
CI=0.27


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-29]:
1jx6a_PU_1-29
CI=0.39


[30-48]:
1jx6a_PU_30-48
CI=0.00


[49-65]:
1jx6a_PU_49-65
CI=0.33


[66-93]:
1jx6a_PU_66-93
CI=0.46


[94-110]:
1jx6a_PU_94-110
CI=0.11


[111-131]:
1jx6a_PU_111-131
CI=0.43


[132-153]:
1jx6a_PU_132-153
CI=2.15


[154-170]:
1jx6a_PU_154-170
CI=0.00


[171-210]:
1jx6a_PU_171-210
CI=2.58


[211-232]:
1jx6a_PU_211-232
CI=0.43


[233-263]:
1jx6a_PU_233-263
CI=1.77


[264-288]:
1jx6a_PU_264-288
CI=1.13


[289-311]:
1jx6a_PU_289-311
CI=0.56


[312-338 ]:
1jx6a_PU_312-338
CI=0.27