Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-101]:
1jyea_PU0_1-101
CI=3.66


[102-229]:
1jyea_PU0_102-229
CI=4.38


[230-271 ]:
1jyea_PU0_230-271
CI=0.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-101]:
1jyea_PU1_1-101
CI=3.66


[102-229]:
1jyea_PU1_102-229
CI=4.38


[230-253]:
1jyea_PU1_230-253
CI=0.39


[254-271 ]:
1jyea_PU1_254-271
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-101]:
1jyea_PU2_1-101
CI=3.66


[102-156]:
1jyea_PU2_102-156
CI=2.33


[157-229]:
1jyea_PU2_157-229
CI=4.05


[230-253]:
1jyea_PU2_230-253
CI=0.39


[254-271 ]:
1jyea_PU2_254-271
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-59]:
1jyea_PU3_1-59
CI=2.43


[60-101]:
1jyea_PU3_60-101
CI=3.28


[102-156]:
1jyea_PU3_102-156
CI=2.33


[157-229]:
1jyea_PU3_157-229
CI=4.05


[230-253]:
1jyea_PU3_230-253
CI=0.39


[254-271 ]:
1jyea_PU3_254-271
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-37]:
1jyea_PU4_1-37
CI=1.91


[38-59]:
1jyea_PU4_38-59
CI=0.51


[60-101]:
1jyea_PU4_60-101
CI=3.28


[102-156]:
1jyea_PU4_102-156
CI=2.33


[157-229]:
1jyea_PU4_157-229
CI=4.05


[230-253]:
1jyea_PU4_230-253
CI=0.39


[254-271 ]:
1jyea_PU4_254-271
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-37]:
1jyea_PU5_1-37
CI=1.91


[38-59]:
1jyea_PU5_38-59
CI=0.51


[60-101]:
1jyea_PU5_60-101
CI=3.28


[102-119]:
1jyea_PU5_102-119
CI=0.00


[120-156]:
1jyea_PU5_120-156
CI=2.21


[157-229]:
1jyea_PU5_157-229
CI=4.05


[230-253]:
1jyea_PU5_230-253
CI=0.39


[254-271 ]:
1jyea_PU5_254-271
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-37]:
1jyea_PU6_1-37
CI=1.91


[38-59]:
1jyea_PU6_38-59
CI=0.51


[60-101]:
1jyea_PU6_60-101
CI=3.28


[102-119]:
1jyea_PU6_102-119
CI=0.00


[120-156]:
1jyea_PU6_120-156
CI=2.21


[157-211]:
1jyea_PU6_157-211
CI=3.65


[212-229]:
1jyea_PU6_212-229
CI=1.35


[230-253]:
1jyea_PU6_230-253
CI=0.39


[254-271 ]:
1jyea_PU6_254-271
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-37]:
1jyea_PU7_1-37
CI=1.91


[38-59]:
1jyea_PU7_38-59
CI=0.51


[60-101]:
1jyea_PU7_60-101
CI=3.28


[102-119]:
1jyea_PU7_102-119
CI=0.00


[120-156]:
1jyea_PU7_120-156
CI=2.21


[157-176]:
1jyea_PU7_157-176
CI=0.28


[177-211]:
1jyea_PU7_177-211
CI=2.70


[212-229]:
1jyea_PU7_212-229
CI=1.35


[230-253]:
1jyea_PU7_230-253
CI=0.39


[254-271 ]:
1jyea_PU7_254-271
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-37]:
1jyea_PU8_1-37
CI=1.91


[38-59]:
1jyea_PU8_38-59
CI=0.51


[60-101]:
1jyea_PU8_60-101
CI=3.28


[102-119]:
1jyea_PU8_102-119
CI=0.00


[120-140]:
1jyea_PU8_120-140
CI=1.32


[141-156]:
1jyea_PU8_141-156
CI=0.23


[157-176]:
1jyea_PU8_157-176
CI=0.28


[177-211]:
1jyea_PU8_177-211
CI=2.70


[212-229]:
1jyea_PU8_212-229
CI=1.35


[230-253]:
1jyea_PU8_230-253
CI=0.39


[254-271 ]:
1jyea_PU8_254-271
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-19]:
1jyea_PU9_1-19
CI=0.48


[20-37]:
1jyea_PU9_20-37
CI=0.31


[38-59]:
1jyea_PU9_38-59
CI=0.51


[60-101]:
1jyea_PU9_60-101
CI=3.28


[102-119]:
1jyea_PU9_102-119
CI=0.00


[120-140]:
1jyea_PU9_120-140
CI=1.32


[141-156]:
1jyea_PU9_141-156
CI=0.23


[157-176]:
1jyea_PU9_157-176
CI=0.28


[177-211]:
1jyea_PU9_177-211
CI=2.70


[212-229]:
1jyea_PU9_212-229
CI=1.35


[230-253]:
1jyea_PU9_230-253
CI=0.39


[254-271 ]:
1jyea_PU9_254-271
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-19]:
1jyea_PU10_1-19
CI=0.48


[20-37]:
1jyea_PU10_20-37
CI=0.31


[38-59]:
1jyea_PU10_38-59
CI=0.51


[60-85]:
1jyea_PU10_60-85
CI=1.24


[86-101]:
1jyea_PU10_86-101
CI=1.71


[102-119]:
1jyea_PU10_102-119
CI=0.00


[120-140]:
1jyea_PU10_120-140
CI=1.32


[141-156]:
1jyea_PU10_141-156
CI=0.23


[157-176]:
1jyea_PU10_157-176
CI=0.28


[177-211]:
1jyea_PU10_177-211
CI=2.70


[212-229]:
1jyea_PU10_212-229
CI=1.35


[230-253]:
1jyea_PU10_230-253
CI=0.39


[254-271 ]:
1jyea_PU10_254-271
CI=0.00


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-19]:
1jyea_PU_1-19
CI=0.48


[20-37]:
1jyea_PU_20-37
CI=0.31


[38-59]:
1jyea_PU_38-59
CI=0.51


[60-85]:
1jyea_PU_60-85
CI=1.24


[86-101]:
1jyea_PU_86-101
CI=1.71


[102-119]:
1jyea_PU_102-119
CI=0.00


[120-140]:
1jyea_PU_120-140
CI=1.32


[141-156]:
1jyea_PU_141-156
CI=0.23


[157-176]:
1jyea_PU_157-176
CI=0.28


[177-193]:
1jyea_PU_177-193
CI=0.43


[194-211]:
1jyea_PU_194-211
CI=0.71


[212-229]:
1jyea_PU_212-229
CI=1.35


[230-253]:
1jyea_PU_230-253
CI=0.39


[254-271 ]:
1jyea_PU_254-271
CI=0.00