Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1k6ka_PU0_1-49
CI=1.00


[50-76]:
1k6ka_PU0_50-76
CI=0.00


[77-142 ]:
1k6ka_PU0_77-142
CI=1.04


Level 1
PU
Molecule needs Java 1.4 Structure


[1-33]:
1k6ka_PU1_1-33
CI=0.90


[34-49]:
1k6ka_PU1_34-49
CI=0.35


[50-76]:
1k6ka_PU1_50-76
CI=0.00


[77-142 ]:
1k6ka_PU1_77-142
CI=1.04


Level 2
PU
Molecule needs Java 1.4 Structure


[1-33]:
1k6ka_PU2_1-33
CI=0.90


[34-49]:
1k6ka_PU2_34-49
CI=0.35


[50-76]:
1k6ka_PU2_50-76
CI=0.00


[77-115]:
1k6ka_PU2_77-115
CI=1.12


[116-142 ]:
1k6ka_PU2_116-142
CI=0.13


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1k6ka_PU3_1-17
CI=0.10


[18-33]:
1k6ka_PU3_18-33
CI=0.00


[34-49]:
1k6ka_PU3_34-49
CI=0.35


[50-76]:
1k6ka_PU3_50-76
CI=0.00


[77-115]:
1k6ka_PU3_77-115
CI=1.12


[116-142 ]:
1k6ka_PU3_116-142
CI=0.13


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1k6ka_PU_1-17
CI=0.10


[18-33]:
1k6ka_PU_18-33
CI=0.00


[34-49]:
1k6ka_PU_34-49
CI=0.35


[50-76]:
1k6ka_PU_50-76
CI=0.00


[77-93]:
1k6ka_PU_77-93
CI=0.00


[94-115]:
1k6ka_PU_94-115
CI=0.34


[116-142 ]:
1k6ka_PU_116-142
CI=0.13