Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1k8ua_PU0_1-25
CI=0.45


[26-87 ]:
1k8ua_PU0_26-87
CI=1.62


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1k8ua_PU1_1-25
CI=0.45


[26-64]:
1k8ua_PU1_26-64
CI=1.33


[65-87 ]:
1k8ua_PU1_65-87
CI=0.32


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1k8ua_PU_1-25
CI=0.45


[26-42]:
1k8ua_PU_26-42
CI=0.10


[43-64]:
1k8ua_PU_43-64
CI=0.26


[65-87 ]:
1k8ua_PU_65-87
CI=0.32