Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-59]:
1kcqa_PU0_1-59
CI=4.42


[60-94]:
1kcqa_PU0_60-94
CI=0.70


[95-103 ]:
1kcqa_PU0_95-103
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-59]:
1kcqa_PU1_1-59
CI=4.42


[60-76]:
1kcqa_PU1_60-76
CI=0.88


[77-94]:
1kcqa_PU1_77-94
CI=0.21


[95-103 ]:
1kcqa_PU1_95-103
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1kcqa_PU2_1-25
CI=2.35


[26-59]:
1kcqa_PU2_26-59
CI=2.97


[60-76]:
1kcqa_PU2_60-76
CI=0.88


[77-94]:
1kcqa_PU2_77-94
CI=0.21


[95-103 ]:
1kcqa_PU2_95-103
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-25]:
1kcqa_PU_1-25
CI=2.35


[26-43]:
1kcqa_PU_26-43
CI=1.66


[44-59]:
1kcqa_PU_44-59
CI=0.11


[60-76]:
1kcqa_PU_60-76
CI=0.88


[77-94]:
1kcqa_PU_77-94
CI=0.21


[95-103 ]:
1kcqa_PU_95-103
CI=0.00