Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-90]:
1khca_PU0_1-90
CI=3.74


[91-135 ]:
1khca_PU0_91-135
CI=1.17


Level 1
PU
Molecule needs Java 1.4 Structure


[1-71]:
1khca_PU1_1-71
CI=3.82


[72-90]:
1khca_PU1_72-90
CI=0.39


[91-135 ]:
1khca_PU1_91-135
CI=1.17


Level 2
PU
Molecule needs Java 1.4 Structure


[1-71]:
1khca_PU2_1-71
CI=3.82


[72-90]:
1khca_PU2_72-90
CI=0.39


[91-117]:
1khca_PU2_91-117
CI=0.48


[118-135 ]:
1khca_PU2_118-135
CI=0.30


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-29]:
1khca_PU_1-29
CI=2.12


[30-61]:
1khca_PU_30-61
CI=2.45


[62-71]:
1khca_PU_62-71
CI=0.00


[72-90]:
1khca_PU_72-90
CI=0.39


[91-117]:
1khca_PU_91-117
CI=0.48


[118-135 ]:
1khca_PU_118-135
CI=0.30