Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-64]:
1khda_PU0_1-64
CI=1.84


[65-324 ]:
1khda_PU0_65-324
CI=4.51


Level 1
PU
Molecule needs Java 1.4 Structure


[1-64]:
1khda_PU1_1-64
CI=1.84


[65-149]:
1khda_PU1_65-149
CI=2.65


[150-165]:
1khda_PU1_150-165
CI=0.22


[166-324 ]:
1khda_PU1_166-324
CI=3.72


Level 2
PU
Molecule needs Java 1.4 Structure


[1-64]:
1khda_PU2_1-64
CI=1.84


[65-149]:
1khda_PU2_65-149
CI=2.65


[150-165]:
1khda_PU2_150-165
CI=0.22


[166-240]:
1khda_PU2_166-240
CI=4.44


[241-324 ]:
1khda_PU2_241-324
CI=2.16


Level 3
PU
Molecule needs Java 1.4 Structure


[1-64]:
1khda_PU3_1-64
CI=1.84


[65-149]:
1khda_PU3_65-149
CI=2.65


[150-165]:
1khda_PU3_150-165
CI=0.22


[166-240]:
1khda_PU3_166-240
CI=4.44


[241-281]:
1khda_PU3_241-281
CI=1.20


[282-307]:
1khda_PU3_282-307
CI=1.86


[308-324 ]:
1khda_PU3_308-324
CI=0.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-64]:
1khda_PU4_1-64
CI=1.84


[65-149]:
1khda_PU4_65-149
CI=2.65


[150-165]:
1khda_PU4_150-165
CI=0.22


[166-240]:
1khda_PU4_166-240
CI=4.44


[241-257]:
1khda_PU4_241-257
CI=0.33


[258-281]:
1khda_PU4_258-281
CI=1.00


[282-307]:
1khda_PU4_282-307
CI=1.86


[308-324 ]:
1khda_PU4_308-324
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-64]:
1khda_PU5_1-64
CI=1.84


[65-80]:
1khda_PU5_65-80
CI=0.00


[81-104]:
1khda_PU5_81-104
CI=0.00


[105-149]:
1khda_PU5_105-149
CI=2.13


[150-165]:
1khda_PU5_150-165
CI=0.22


[166-240]:
1khda_PU5_166-240
CI=4.44


[241-257]:
1khda_PU5_241-257
CI=0.33


[258-281]:
1khda_PU5_258-281
CI=1.00


[282-307]:
1khda_PU5_282-307
CI=1.86


[308-324 ]:
1khda_PU5_308-324
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1khda_PU6_1-23
CI=0.39


[24-49]:
1khda_PU6_24-49
CI=0.14


[50-64]:
1khda_PU6_50-64
CI=0.00


[65-80]:
1khda_PU6_65-80
CI=0.00


[81-104]:
1khda_PU6_81-104
CI=0.00


[105-149]:
1khda_PU6_105-149
CI=2.13


[150-165]:
1khda_PU6_150-165
CI=0.22


[166-240]:
1khda_PU6_166-240
CI=4.44


[241-257]:
1khda_PU6_241-257
CI=0.33


[258-281]:
1khda_PU6_258-281
CI=1.00


[282-307]:
1khda_PU6_282-307
CI=1.86


[308-324 ]:
1khda_PU6_308-324
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1khda_PU7_1-23
CI=0.39


[24-49]:
1khda_PU7_24-49
CI=0.14


[50-64]:
1khda_PU7_50-64
CI=0.00


[65-80]:
1khda_PU7_65-80
CI=0.00


[81-104]:
1khda_PU7_81-104
CI=0.00


[105-149]:
1khda_PU7_105-149
CI=2.13


[150-165]:
1khda_PU7_150-165
CI=0.22


[166-185]:
1khda_PU7_166-185
CI=0.28


[186-240]:
1khda_PU7_186-240
CI=4.66


[241-257]:
1khda_PU7_241-257
CI=0.33


[258-281]:
1khda_PU7_258-281
CI=1.00


[282-307]:
1khda_PU7_282-307
CI=1.86


[308-324 ]:
1khda_PU7_308-324
CI=0.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1khda_PU8_1-23
CI=0.39


[24-49]:
1khda_PU8_24-49
CI=0.14


[50-64]:
1khda_PU8_50-64
CI=0.00


[65-80]:
1khda_PU8_65-80
CI=0.00


[81-104]:
1khda_PU8_81-104
CI=0.00


[105-123]:
1khda_PU8_105-123
CI=0.39


[124-149]:
1khda_PU8_124-149
CI=0.64


[150-165]:
1khda_PU8_150-165
CI=0.22


[166-185]:
1khda_PU8_166-185
CI=0.28


[186-240]:
1khda_PU8_186-240
CI=4.66


[241-257]:
1khda_PU8_241-257
CI=0.33


[258-281]:
1khda_PU8_258-281
CI=1.00


[282-307]:
1khda_PU8_282-307
CI=1.86


[308-324 ]:
1khda_PU8_308-324
CI=0.22


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-23]:
1khda_PU_1-23
CI=0.39


[24-49]:
1khda_PU_24-49
CI=0.14


[50-64]:
1khda_PU_50-64
CI=0.00


[65-80]:
1khda_PU_65-80
CI=0.00


[81-104]:
1khda_PU_81-104
CI=0.00


[105-123]:
1khda_PU_105-123
CI=0.39


[124-149]:
1khda_PU_124-149
CI=0.64


[150-165]:
1khda_PU_150-165
CI=0.22


[166-185]:
1khda_PU_166-185
CI=0.28


[186-205]:
1khda_PU_186-205
CI=0.36


[206-240]:
1khda_PU_206-240
CI=3.67


[241-257]:
1khda_PU_241-257
CI=0.33


[258-281]:
1khda_PU_258-281
CI=1.00


[282-307]:
1khda_PU_282-307
CI=1.86


[308-324 ]:
1khda_PU_308-324
CI=0.22