Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-51]:
1kmta_PU0_1-51
CI=2.37


[52-94]:
1kmta_PU0_52-94
CI=3.17


[95-138 ]:
1kmta_PU0_95-138
CI=2.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-51]:
1kmta_PU1_1-51
CI=2.37


[52-94]:
1kmta_PU1_52-94
CI=3.17


[95-111]:
1kmta_PU1_95-111
CI=0.10


[112-138 ]:
1kmta_PU1_112-138
CI=2.39


Level 2
PU
Molecule needs Java 1.4 Structure


[1-28]:
1kmta_PU2_1-28
CI=1.68


[29-51]:
1kmta_PU2_29-51
CI=0.00


[52-94]:
1kmta_PU2_52-94
CI=3.17


[95-111]:
1kmta_PU2_95-111
CI=0.10


[112-138 ]:
1kmta_PU2_112-138
CI=2.39


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-28]:
1kmta_PU_1-28
CI=1.68


[29-51]:
1kmta_PU_29-51
CI=0.00


[52-78]:
1kmta_PU_52-78
CI=1.18


[79-94]:
1kmta_PU_79-94
CI=0.12


[95-111]:
1kmta_PU_95-111
CI=0.10


[112-138 ]:
1kmta_PU_112-138
CI=2.39