Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1kqra_PU0_1-48
CI=1.48


[49-67]:
1kqra_PU0_49-67
CI=2.57


[68-160 ]:
1kqra_PU0_68-160
CI=3.31


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1kqra_PU1_1-19
CI=0.00


[20-48]:
1kqra_PU1_20-48
CI=2.42


[49-67]:
1kqra_PU1_49-67
CI=2.57


[68-160 ]:
1kqra_PU1_68-160
CI=3.31


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1kqra_PU2_1-19
CI=0.00


[20-48]:
1kqra_PU2_20-48
CI=2.42


[49-67]:
1kqra_PU2_49-67
CI=2.57


[68-97]:
1kqra_PU2_68-97
CI=2.81


[98-160 ]:
1kqra_PU2_98-160
CI=2.48


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1kqra_PU3_1-19
CI=0.00


[20-48]:
1kqra_PU3_20-48
CI=2.42


[49-67]:
1kqra_PU3_49-67
CI=2.57


[68-97]:
1kqra_PU3_68-97
CI=2.81


[98-136]:
1kqra_PU3_98-136
CI=2.61


[137-160 ]:
1kqra_PU3_137-160
CI=0.23


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1kqra_PU_1-19
CI=0.00


[20-48]:
1kqra_PU_20-48
CI=2.42


[49-67]:
1kqra_PU_49-67
CI=2.57


[68-97]:
1kqra_PU_68-97
CI=2.81


[98-115]:
1kqra_PU_98-115
CI=1.35


[116-136]:
1kqra_PU_116-136
CI=0.00


[137-160 ]:
1kqra_PU_137-160
CI=0.23