Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-173]:
1ks9a_PU0_1-173
CI=4.61


[174-291 ]:
1ks9a_PU0_174-291
CI=2.55


Level 1
PU
Molecule needs Java 1.4 Structure


[1-134]:
1ks9a_PU1_1-134
CI=4.39


[135-173]:
1ks9a_PU1_135-173
CI=2.44


[174-291 ]:
1ks9a_PU1_174-291
CI=2.55


Level 2
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ks9a_PU2_1-56
CI=3.57


[57-118]:
1ks9a_PU2_57-118
CI=3.08


[119-134]:
1ks9a_PU2_119-134
CI=2.32


[135-173]:
1ks9a_PU2_135-173
CI=2.44


[174-291 ]:
1ks9a_PU2_174-291
CI=2.55


Level 3
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ks9a_PU3_1-56
CI=3.57


[57-118]:
1ks9a_PU3_57-118
CI=3.08


[119-134]:
1ks9a_PU3_119-134
CI=2.32


[135-173]:
1ks9a_PU3_135-173
CI=2.44


[174-192]:
1ks9a_PU3_174-192
CI=0.00


[193-241]:
1ks9a_PU3_193-241
CI=1.75


[242-291 ]:
1ks9a_PU3_242-291
CI=1.14


Level 4
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ks9a_PU4_1-56
CI=3.57


[57-118]:
1ks9a_PU4_57-118
CI=3.08


[119-134]:
1ks9a_PU4_119-134
CI=2.32


[135-173]:
1ks9a_PU4_135-173
CI=2.44


[174-192]:
1ks9a_PU4_174-192
CI=0.00


[193-241]:
1ks9a_PU4_193-241
CI=1.75


[242-258]:
1ks9a_PU4_242-258
CI=0.65


[259-291 ]:
1ks9a_PU4_259-291
CI=0.74


Level 5
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ks9a_PU5_1-56
CI=3.57


[57-118]:
1ks9a_PU5_57-118
CI=3.08


[119-134]:
1ks9a_PU5_119-134
CI=2.32


[135-173]:
1ks9a_PU5_135-173
CI=2.44


[174-192]:
1ks9a_PU5_174-192
CI=0.00


[193-241]:
1ks9a_PU5_193-241
CI=1.75


[242-258]:
1ks9a_PU5_242-258
CI=0.65


[259-275]:
1ks9a_PU5_259-275
CI=0.43


[276-291 ]:
1ks9a_PU5_276-291
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ks9a_PU6_1-28
CI=2.09


[29-56]:
1ks9a_PU6_29-56
CI=2.90


[57-118]:
1ks9a_PU6_57-118
CI=3.08


[119-134]:
1ks9a_PU6_119-134
CI=2.32


[135-173]:
1ks9a_PU6_135-173
CI=2.44


[174-192]:
1ks9a_PU6_174-192
CI=0.00


[193-241]:
1ks9a_PU6_193-241
CI=1.75


[242-258]:
1ks9a_PU6_242-258
CI=0.65


[259-275]:
1ks9a_PU6_259-275
CI=0.43


[276-291 ]:
1ks9a_PU6_276-291
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ks9a_PU7_1-28
CI=2.09


[29-56]:
1ks9a_PU7_29-56
CI=2.90


[57-118]:
1ks9a_PU7_57-118
CI=3.08


[119-134]:
1ks9a_PU7_119-134
CI=2.32


[135-173]:
1ks9a_PU7_135-173
CI=2.44


[174-192]:
1ks9a_PU7_174-192
CI=0.00


[193-224]:
1ks9a_PU7_193-224
CI=0.64


[225-241]:
1ks9a_PU7_225-241
CI=0.00


[242-258]:
1ks9a_PU7_242-258
CI=0.65


[259-275]:
1ks9a_PU7_259-275
CI=0.43


[276-291 ]:
1ks9a_PU7_276-291
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-28]:
1ks9a_PU_1-28
CI=2.09


[29-56]:
1ks9a_PU_29-56
CI=2.90


[57-91]:
1ks9a_PU_57-91
CI=0.97


[92-118]:
1ks9a_PU_92-118
CI=2.10


[119-134]:
1ks9a_PU_119-134
CI=2.32


[135-173]:
1ks9a_PU_135-173
CI=2.44


[174-192]:
1ks9a_PU_174-192
CI=0.00


[193-224]:
1ks9a_PU_193-224
CI=0.64


[225-241]:
1ks9a_PU_225-241
CI=0.00


[242-258]:
1ks9a_PU_242-258
CI=0.65


[259-275]:
1ks9a_PU_259-275
CI=0.43


[276-291 ]:
1ks9a_PU_276-291
CI=0.00