Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-269]:
1ku0a_PU0_1-269
CI=3.73


[270-323]:
1ku0a_PU0_270-323
CI=3.80


[324-388 ]:
1ku0a_PU0_324-388
CI=1.35


Level 1
PU
Molecule needs Java 1.4 Structure


[1-269]:
1ku0a_PU1_1-269
CI=3.73


[270-323]:
1ku0a_PU1_270-323
CI=3.80


[324-353]:
1ku0a_PU1_324-353
CI=2.20


[354-388 ]:
1ku0a_PU1_354-388
CI=0.53


Level 2
PU
Molecule needs Java 1.4 Structure


[1-269]:
1ku0a_PU2_1-269
CI=3.73


[270-323]:
1ku0a_PU2_270-323
CI=3.80


[324-353]:
1ku0a_PU2_324-353
CI=2.20


[354-372]:
1ku0a_PU2_354-372
CI=0.96


[373-388 ]:
1ku0a_PU2_373-388
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-172]:
1ku0a_PU3_1-172
CI=3.81


[173-236]:
1ku0a_PU3_173-236
CI=0.74


[237-269]:
1ku0a_PU3_237-269
CI=0.34


[270-323]:
1ku0a_PU3_270-323
CI=3.80


[324-353]:
1ku0a_PU3_324-353
CI=2.20


[354-372]:
1ku0a_PU3_354-372
CI=0.96


[373-388 ]:
1ku0a_PU3_373-388
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-172]:
1ku0a_PU4_1-172
CI=3.81


[173-204]:
1ku0a_PU4_173-204
CI=0.47


[205-236]:
1ku0a_PU4_205-236
CI=0.70


[237-269]:
1ku0a_PU4_237-269
CI=0.34


[270-323]:
1ku0a_PU4_270-323
CI=3.80


[324-353]:
1ku0a_PU4_324-353
CI=2.20


[354-372]:
1ku0a_PU4_354-372
CI=0.96


[373-388 ]:
1ku0a_PU4_373-388
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ku0a_PU5_1-18
CI=0.00


[19-46]:
1ku0a_PU5_19-46
CI=0.81


[47-172]:
1ku0a_PU5_47-172
CI=3.53


[173-204]:
1ku0a_PU5_173-204
CI=0.47


[205-236]:
1ku0a_PU5_205-236
CI=0.70


[237-269]:
1ku0a_PU5_237-269
CI=0.34


[270-323]:
1ku0a_PU5_270-323
CI=3.80


[324-353]:
1ku0a_PU5_324-353
CI=2.20


[354-372]:
1ku0a_PU5_354-372
CI=0.96


[373-388 ]:
1ku0a_PU5_373-388
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ku0a_PU6_1-18
CI=0.00


[19-46]:
1ku0a_PU6_19-46
CI=0.81


[47-172]:
1ku0a_PU6_47-172
CI=3.53


[173-204]:
1ku0a_PU6_173-204
CI=0.47


[205-236]:
1ku0a_PU6_205-236
CI=0.70


[237-253]:
1ku0a_PU6_237-253
CI=0.54


[254-269]:
1ku0a_PU6_254-269
CI=0.11


[270-323]:
1ku0a_PU6_270-323
CI=3.80


[324-353]:
1ku0a_PU6_324-353
CI=2.20


[354-372]:
1ku0a_PU6_354-372
CI=0.96


[373-388 ]:
1ku0a_PU6_373-388
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ku0a_PU7_1-18
CI=0.00


[19-46]:
1ku0a_PU7_19-46
CI=0.81


[47-123]:
1ku0a_PU7_47-123
CI=2.58


[124-153]:
1ku0a_PU7_124-153
CI=2.59


[154-172]:
1ku0a_PU7_154-172
CI=0.00


[173-204]:
1ku0a_PU7_173-204
CI=0.47


[205-236]:
1ku0a_PU7_205-236
CI=0.70


[237-253]:
1ku0a_PU7_237-253
CI=0.54


[254-269]:
1ku0a_PU7_254-269
CI=0.11


[270-323]:
1ku0a_PU7_270-323
CI=3.80


[324-353]:
1ku0a_PU7_324-353
CI=2.20


[354-372]:
1ku0a_PU7_354-372
CI=0.96


[373-388 ]:
1ku0a_PU7_373-388
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ku0a_PU_1-18
CI=0.00


[19-46]:
1ku0a_PU_19-46
CI=0.81


[47-67]:
1ku0a_PU_47-67
CI=0.98


[68-105]:
1ku0a_PU_68-105
CI=2.68


[106-123]:
1ku0a_PU_106-123
CI=0.60


[124-153]:
1ku0a_PU_124-153
CI=2.59


[154-172]:
1ku0a_PU_154-172
CI=0.00


[173-204]:
1ku0a_PU_173-204
CI=0.47


[205-236]:
1ku0a_PU_205-236
CI=0.70


[237-253]:
1ku0a_PU_237-253
CI=0.54


[254-269]:
1ku0a_PU_254-269
CI=0.11


[270-323]:
1ku0a_PU_270-323
CI=3.80


[324-353]:
1ku0a_PU_324-353
CI=2.20


[354-372]:
1ku0a_PU_354-372
CI=0.96


[373-388 ]:
1ku0a_PU_373-388
CI=0.00