Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-34]:
1kwfa_PU0_1-34
CI=0.28


[35-175]:
1kwfa_PU0_35-175
CI=3.97


[176-363 ]:
1kwfa_PU0_176-363
CI=4.25


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kwfa_PU1_1-17
CI=0.22


[18-34]:
1kwfa_PU1_18-34
CI=0.00


[35-175]:
1kwfa_PU1_35-175
CI=3.97


[176-363 ]:
1kwfa_PU1_176-363
CI=4.25


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kwfa_PU2_1-17
CI=0.22


[18-34]:
1kwfa_PU2_18-34
CI=0.00


[35-175]:
1kwfa_PU2_35-175
CI=3.97


[176-250]:
1kwfa_PU2_176-250
CI=3.70


[251-363 ]:
1kwfa_PU2_251-363
CI=3.13


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kwfa_PU3_1-17
CI=0.22


[18-34]:
1kwfa_PU3_18-34
CI=0.00


[35-152]:
1kwfa_PU3_35-152
CI=3.73


[153-175]:
1kwfa_PU3_153-175
CI=2.44


[176-250]:
1kwfa_PU3_176-250
CI=3.70


[251-363 ]:
1kwfa_PU3_251-363
CI=3.13


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kwfa_PU4_1-17
CI=0.22


[18-34]:
1kwfa_PU4_18-34
CI=0.00


[35-152]:
1kwfa_PU4_35-152
CI=3.73


[153-175]:
1kwfa_PU4_153-175
CI=2.44


[176-250]:
1kwfa_PU4_176-250
CI=3.70


[251-275]:
1kwfa_PU4_251-275
CI=0.91


[276-300]:
1kwfa_PU4_276-300
CI=1.89


[301-363 ]:
1kwfa_PU4_301-363
CI=2.32


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kwfa_PU5_1-17
CI=0.22


[18-34]:
1kwfa_PU5_18-34
CI=0.00


[35-125]:
1kwfa_PU5_35-125
CI=3.82


[126-152]:
1kwfa_PU5_126-152
CI=1.39


[153-175]:
1kwfa_PU5_153-175
CI=2.44


[176-250]:
1kwfa_PU5_176-250
CI=3.70


[251-275]:
1kwfa_PU5_251-275
CI=0.91


[276-300]:
1kwfa_PU5_276-300
CI=1.89


[301-363 ]:
1kwfa_PU5_301-363
CI=2.32


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kwfa_PU6_1-17
CI=0.22


[18-34]:
1kwfa_PU6_18-34
CI=0.00


[35-125]:
1kwfa_PU6_35-125
CI=3.82


[126-152]:
1kwfa_PU6_126-152
CI=1.39


[153-175]:
1kwfa_PU6_153-175
CI=2.44


[176-191]:
1kwfa_PU6_176-191
CI=0.00


[192-207]:
1kwfa_PU6_192-207
CI=0.92


[208-250]:
1kwfa_PU6_208-250
CI=2.98


[251-275]:
1kwfa_PU6_251-275
CI=0.91


[276-300]:
1kwfa_PU6_276-300
CI=1.89


[301-363 ]:
1kwfa_PU6_301-363
CI=2.32


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kwfa_PU7_1-17
CI=0.22


[18-34]:
1kwfa_PU7_18-34
CI=0.00


[35-67]:
1kwfa_PU7_35-67
CI=2.08


[68-86]:
1kwfa_PU7_68-86
CI=1.35


[87-125]:
1kwfa_PU7_87-125
CI=2.30


[126-152]:
1kwfa_PU7_126-152
CI=1.39


[153-175]:
1kwfa_PU7_153-175
CI=2.44


[176-191]:
1kwfa_PU7_176-191
CI=0.00


[192-207]:
1kwfa_PU7_192-207
CI=0.92


[208-250]:
1kwfa_PU7_208-250
CI=2.98


[251-275]:
1kwfa_PU7_251-275
CI=0.91


[276-300]:
1kwfa_PU7_276-300
CI=1.89


[301-363 ]:
1kwfa_PU7_301-363
CI=2.32


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1kwfa_PU_1-17
CI=0.22


[18-34]:
1kwfa_PU_18-34
CI=0.00


[35-67]:
1kwfa_PU_35-67
CI=2.08


[68-86]:
1kwfa_PU_68-86
CI=1.35


[87-125]:
1kwfa_PU_87-125
CI=2.30


[126-152]:
1kwfa_PU_126-152
CI=1.39


[153-175]:
1kwfa_PU_153-175
CI=2.44


[176-191]:
1kwfa_PU_176-191
CI=0.00


[192-207]:
1kwfa_PU_192-207
CI=0.92


[208-250]:
1kwfa_PU_208-250
CI=2.98


[251-275]:
1kwfa_PU_251-275
CI=0.91


[276-300]:
1kwfa_PU_276-300
CI=1.89


[301-347]:
1kwfa_PU_301-347
CI=2.32


[348-363 ]:
1kwfa_PU_348-363
CI=0.34