Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-37]:
1l2ha_PU0_1-37
CI=2.67


[38-116]:
1l2ha_PU0_38-116
CI=4.10


[117-144 ]:
1l2ha_PU0_117-144
CI=2.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-37]:
1l2ha_PU1_1-37
CI=2.67


[38-60]:
1l2ha_PU1_38-60
CI=2.80


[61-86]:
1l2ha_PU1_61-86
CI=2.27


[87-116]:
1l2ha_PU1_87-116
CI=2.27


[117-144 ]:
1l2ha_PU1_117-144
CI=2.38


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1l2ha_PU_1-17
CI=0.77


[18-37]:
1l2ha_PU_18-37
CI=0.45


[38-60]:
1l2ha_PU_38-60
CI=2.80


[61-86]:
1l2ha_PU_61-86
CI=2.27


[87-116]:
1l2ha_PU_87-116
CI=2.27


[117-144 ]:
1l2ha_PU_117-144
CI=2.38