Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-61]:
1l3pa_PU0_1-61
CI=2.65


[62-90]:
1l3pa_PU0_62-90
CI=1.92


[91-102 ]:
1l3pa_PU0_91-102
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1l3pa_PU_1-16
CI=0.00


[17-38]:
1l3pa_PU_17-38
CI=1.77


[39-61]:
1l3pa_PU_39-61
CI=2.02


[62-90]:
1l3pa_PU_62-90
CI=1.92


[91-102 ]:
1l3pa_PU_91-102
CI=0.00