Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-55]:
1l5oa_PU0_1-55
CI=1.60


[56-324]:
1l5oa_PU0_56-324
CI=5.15


[325-346 ]:
1l5oa_PU0_325-346
CI=0.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-55]:
1l5oa_PU1_1-55
CI=1.60


[56-242]:
1l5oa_PU1_56-242
CI=4.02


[243-324]:
1l5oa_PU1_243-324
CI=3.97


[325-346 ]:
1l5oa_PU1_325-346
CI=0.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-55]:
1l5oa_PU2_1-55
CI=1.60


[56-176]:
1l5oa_PU2_56-176
CI=3.55


[177-226]:
1l5oa_PU2_177-226
CI=1.33


[227-242]:
1l5oa_PU2_227-242
CI=0.45


[243-324]:
1l5oa_PU2_243-324
CI=3.97


[325-346 ]:
1l5oa_PU2_325-346
CI=0.08


Level 3
PU
Molecule needs Java 1.4 Structure


[1-55]:
1l5oa_PU3_1-55
CI=1.60


[56-131]:
1l5oa_PU3_56-131
CI=3.07


[132-162]:
1l5oa_PU3_132-162
CI=0.25


[163-176]:
1l5oa_PU3_163-176
CI=0.00


[177-226]:
1l5oa_PU3_177-226
CI=1.33


[227-242]:
1l5oa_PU3_227-242
CI=0.45


[243-324]:
1l5oa_PU3_243-324
CI=3.97


[325-346 ]:
1l5oa_PU3_325-346
CI=0.08


Level 4
PU
Molecule needs Java 1.4 Structure


[1-55]:
1l5oa_PU4_1-55
CI=1.60


[56-131]:
1l5oa_PU4_56-131
CI=3.07


[132-162]:
1l5oa_PU4_132-162
CI=0.25


[163-176]:
1l5oa_PU4_163-176
CI=0.00


[177-226]:
1l5oa_PU4_177-226
CI=1.33


[227-242]:
1l5oa_PU4_227-242
CI=0.45


[243-283]:
1l5oa_PU4_243-283
CI=2.96


[284-324]:
1l5oa_PU4_284-324
CI=2.54


[325-346 ]:
1l5oa_PU4_325-346
CI=0.08


Level 5
PU
Molecule needs Java 1.4 Structure


[1-55]:
1l5oa_PU5_1-55
CI=1.60


[56-79]:
1l5oa_PU5_56-79
CI=0.30


[80-104]:
1l5oa_PU5_80-104
CI=0.37


[105-131]:
1l5oa_PU5_105-131
CI=2.59


[132-162]:
1l5oa_PU5_132-162
CI=0.25


[163-176]:
1l5oa_PU5_163-176
CI=0.00


[177-226]:
1l5oa_PU5_177-226
CI=1.33


[227-242]:
1l5oa_PU5_227-242
CI=0.45


[243-283]:
1l5oa_PU5_243-283
CI=2.96


[284-324]:
1l5oa_PU5_284-324
CI=2.54


[325-346 ]:
1l5oa_PU5_325-346
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-55]:
1l5oa_PU6_1-55
CI=1.60


[56-79]:
1l5oa_PU6_56-79
CI=0.30


[80-104]:
1l5oa_PU6_80-104
CI=0.37


[105-131]:
1l5oa_PU6_105-131
CI=2.59


[132-162]:
1l5oa_PU6_132-162
CI=0.25


[163-176]:
1l5oa_PU6_163-176
CI=0.00


[177-196]:
1l5oa_PU6_177-196
CI=1.20


[197-226]:
1l5oa_PU6_197-226
CI=0.19


[227-242]:
1l5oa_PU6_227-242
CI=0.45


[243-283]:
1l5oa_PU6_243-283
CI=2.96


[284-324]:
1l5oa_PU6_284-324
CI=2.54


[325-346 ]:
1l5oa_PU6_325-346
CI=0.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-55]:
1l5oa_PU7_1-55
CI=1.60


[56-79]:
1l5oa_PU7_56-79
CI=0.30


[80-104]:
1l5oa_PU7_80-104
CI=0.37


[105-131]:
1l5oa_PU7_105-131
CI=2.59


[132-162]:
1l5oa_PU7_132-162
CI=0.25


[163-176]:
1l5oa_PU7_163-176
CI=0.00


[177-196]:
1l5oa_PU7_177-196
CI=1.20


[197-226]:
1l5oa_PU7_197-226
CI=0.19


[227-242]:
1l5oa_PU7_227-242
CI=0.45


[243-283]:
1l5oa_PU7_243-283
CI=2.96


[284-308]:
1l5oa_PU7_284-308
CI=1.95


[309-324]:
1l5oa_PU7_309-324
CI=0.22


[325-346 ]:
1l5oa_PU7_325-346
CI=0.08


Level 8
PU
Molecule needs Java 1.4 Structure


[1-32]:
1l5oa_PU8_1-32
CI=0.12


[33-55]:
1l5oa_PU8_33-55
CI=1.13


[56-79]:
1l5oa_PU8_56-79
CI=0.30


[80-104]:
1l5oa_PU8_80-104
CI=0.37


[105-131]:
1l5oa_PU8_105-131
CI=2.59


[132-162]:
1l5oa_PU8_132-162
CI=0.25


[163-176]:
1l5oa_PU8_163-176
CI=0.00


[177-196]:
1l5oa_PU8_177-196
CI=1.20


[197-226]:
1l5oa_PU8_197-226
CI=0.19


[227-242]:
1l5oa_PU8_227-242
CI=0.45


[243-283]:
1l5oa_PU8_243-283
CI=2.96


[284-308]:
1l5oa_PU8_284-308
CI=1.95


[309-324]:
1l5oa_PU8_309-324
CI=0.22


[325-346 ]:
1l5oa_PU8_325-346
CI=0.08


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-32]:
1l5oa_PU_1-32
CI=0.12


[33-55]:
1l5oa_PU_33-55
CI=1.13


[56-79]:
1l5oa_PU_56-79
CI=0.30


[80-104]:
1l5oa_PU_80-104
CI=0.37


[105-131]:
1l5oa_PU_105-131
CI=2.59


[132-162]:
1l5oa_PU_132-162
CI=0.25


[163-176]:
1l5oa_PU_163-176
CI=0.00


[177-196]:
1l5oa_PU_177-196
CI=1.20


[197-226]:
1l5oa_PU_197-226
CI=0.19


[227-242]:
1l5oa_PU_227-242
CI=0.45


[243-259]:
1l5oa_PU_243-259
CI=0.65


[260-283]:
1l5oa_PU_260-283
CI=0.47


[284-308]:
1l5oa_PU_284-308
CI=1.95


[309-324]:
1l5oa_PU_309-324
CI=0.22


[325-346 ]:
1l5oa_PU_325-346
CI=0.08