Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-57]:
1l6pa_PU0_1-57
CI=1.31


[58-73]:
1l6pa_PU0_58-73
CI=1.74


[74-121 ]:
1l6pa_PU0_74-121
CI=2.79


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1l6pa_PU1_1-41
CI=1.68


[42-57]:
1l6pa_PU1_42-57
CI=0.11


[58-73]:
1l6pa_PU1_58-73
CI=1.74


[74-121 ]:
1l6pa_PU1_74-121
CI=2.79


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1l6pa_PU2_1-17
CI=0.00


[18-41]:
1l6pa_PU2_18-41
CI=1.18


[42-57]:
1l6pa_PU2_42-57
CI=0.11


[58-73]:
1l6pa_PU2_58-73
CI=1.74


[74-121 ]:
1l6pa_PU2_74-121
CI=2.79


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1l6pa_PU_1-17
CI=0.00


[18-41]:
1l6pa_PU_18-41
CI=1.18


[42-57]:
1l6pa_PU_42-57
CI=0.11


[58-73]:
1l6pa_PU_58-73
CI=1.74


[74-91]:
1l6pa_PU_74-91
CI=0.00


[92-121 ]:
1l6pa_PU_92-121
CI=2.54