Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lb6a_PU0_1-58
CI=2.46


[59-141]:
1lb6a_PU0_59-141
CI=3.65


[142-155 ]:
1lb6a_PU0_142-155
CI=0.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lb6a_PU1_1-58
CI=2.46


[59-81]:
1lb6a_PU1_59-81
CI=0.00


[82-105]:
1lb6a_PU1_82-105
CI=2.37


[106-141]:
1lb6a_PU1_106-141
CI=0.79


[142-155 ]:
1lb6a_PU1_142-155
CI=0.12


Level 2
PU
Molecule needs Java 1.4 Structure


[1-58]:
1lb6a_PU2_1-58
CI=2.46


[59-81]:
1lb6a_PU2_59-81
CI=0.00


[82-105]:
1lb6a_PU2_82-105
CI=2.37


[106-123]:
1lb6a_PU2_106-123
CI=1.02


[124-141]:
1lb6a_PU2_124-141
CI=0.00


[142-155 ]:
1lb6a_PU2_142-155
CI=0.12


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-25]:
1lb6a_PU_1-25
CI=0.00


[26-58]:
1lb6a_PU_26-58
CI=2.55


[59-81]:
1lb6a_PU_59-81
CI=0.00


[82-105]:
1lb6a_PU_82-105
CI=2.37


[106-123]:
1lb6a_PU_106-123
CI=1.02


[124-141]:
1lb6a_PU_124-141
CI=0.00


[142-155 ]:
1lb6a_PU_142-155
CI=0.12