Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU0_1-30
CI=1.07


[31-269]:
1lc5a_PU0_31-269
CI=3.84


[270-355 ]:
1lc5a_PU0_270-355
CI=2.78


Level 1
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU1_1-30
CI=1.07


[31-90]:
1lc5a_PU1_31-90
CI=0.76


[91-182]:
1lc5a_PU1_91-182
CI=3.15


[183-269]:
1lc5a_PU1_183-269
CI=1.77


[270-355 ]:
1lc5a_PU1_270-355
CI=2.78


Level 2
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU2_1-30
CI=1.07


[31-54]:
1lc5a_PU2_31-54
CI=0.00


[55-90]:
1lc5a_PU2_55-90
CI=1.25


[91-182]:
1lc5a_PU2_91-182
CI=3.15


[183-269]:
1lc5a_PU2_183-269
CI=1.77


[270-355 ]:
1lc5a_PU2_270-355
CI=2.78


Level 3
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU3_1-30
CI=1.07


[31-54]:
1lc5a_PU3_31-54
CI=0.00


[55-90]:
1lc5a_PU3_55-90
CI=1.25


[91-182]:
1lc5a_PU3_91-182
CI=3.15


[183-228]:
1lc5a_PU3_183-228
CI=2.33


[229-245]:
1lc5a_PU3_229-245
CI=0.00


[246-269]:
1lc5a_PU3_246-269
CI=0.07


[270-355 ]:
1lc5a_PU3_270-355
CI=2.78


Level 4
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU4_1-30
CI=1.07


[31-54]:
1lc5a_PU4_31-54
CI=0.00


[55-90]:
1lc5a_PU4_55-90
CI=1.25


[91-182]:
1lc5a_PU4_91-182
CI=3.15


[183-228]:
1lc5a_PU4_183-228
CI=2.33


[229-245]:
1lc5a_PU4_229-245
CI=0.00


[246-269]:
1lc5a_PU4_246-269
CI=0.07


[270-286]:
1lc5a_PU4_270-286
CI=0.00


[287-337]:
1lc5a_PU4_287-337
CI=3.10


[338-355 ]:
1lc5a_PU4_338-355
CI=0.10


Level 5
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU5_1-30
CI=1.07


[31-54]:
1lc5a_PU5_31-54
CI=0.00


[55-90]:
1lc5a_PU5_55-90
CI=1.25


[91-124]:
1lc5a_PU5_91-124
CI=2.68


[125-182]:
1lc5a_PU5_125-182
CI=2.01


[183-228]:
1lc5a_PU5_183-228
CI=2.33


[229-245]:
1lc5a_PU5_229-245
CI=0.00


[246-269]:
1lc5a_PU5_246-269
CI=0.07


[270-286]:
1lc5a_PU5_270-286
CI=0.00


[287-337]:
1lc5a_PU5_287-337
CI=3.10


[338-355 ]:
1lc5a_PU5_338-355
CI=0.10


Level 6
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU6_1-30
CI=1.07


[31-54]:
1lc5a_PU6_31-54
CI=0.00


[55-90]:
1lc5a_PU6_55-90
CI=1.25


[91-124]:
1lc5a_PU6_91-124
CI=2.68


[125-141]:
1lc5a_PU6_125-141
CI=0.54


[142-182]:
1lc5a_PU6_142-182
CI=1.81


[183-228]:
1lc5a_PU6_183-228
CI=2.33


[229-245]:
1lc5a_PU6_229-245
CI=0.00


[246-269]:
1lc5a_PU6_246-269
CI=0.07


[270-286]:
1lc5a_PU6_270-286
CI=0.00


[287-337]:
1lc5a_PU6_287-337
CI=3.10


[338-355 ]:
1lc5a_PU6_338-355
CI=0.10


Level 7
PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU7_1-30
CI=1.07


[31-54]:
1lc5a_PU7_31-54
CI=0.00


[55-90]:
1lc5a_PU7_55-90
CI=1.25


[91-124]:
1lc5a_PU7_91-124
CI=2.68


[125-141]:
1lc5a_PU7_125-141
CI=0.54


[142-182]:
1lc5a_PU7_142-182
CI=1.81


[183-210]:
1lc5a_PU7_183-210
CI=1.01


[211-228]:
1lc5a_PU7_211-228
CI=1.34


[229-245]:
1lc5a_PU7_229-245
CI=0.00


[246-269]:
1lc5a_PU7_246-269
CI=0.07


[270-286]:
1lc5a_PU7_270-286
CI=0.00


[287-337]:
1lc5a_PU7_287-337
CI=3.10


[338-355 ]:
1lc5a_PU7_338-355
CI=0.10


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-30]:
1lc5a_PU_1-30
CI=1.07


[31-54]:
1lc5a_PU_31-54
CI=0.00


[55-72]:
1lc5a_PU_55-72
CI=0.00


[73-90]:
1lc5a_PU_73-90
CI=0.51


[91-124]:
1lc5a_PU_91-124
CI=2.68


[125-141]:
1lc5a_PU_125-141
CI=0.54


[142-182]:
1lc5a_PU_142-182
CI=1.81


[183-210]:
1lc5a_PU_183-210
CI=1.01


[211-228]:
1lc5a_PU_211-228
CI=1.34


[229-245]:
1lc5a_PU_229-245
CI=0.00


[246-269]:
1lc5a_PU_246-269
CI=0.07


[270-286]:
1lc5a_PU_270-286
CI=0.00


[287-337]:
1lc5a_PU_287-337
CI=3.10


[338-355 ]:
1lc5a_PU_338-355
CI=0.10