Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-61]:
1lkka_PU0_1-61
CI=3.79


[62-95]:
1lkka_PU0_62-95
CI=1.79


[96-105 ]:
1lkka_PU0_96-105
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-61]:
1lkka_PU1_1-61
CI=3.79


[62-79]:
1lkka_PU1_62-79
CI=2.07


[80-95]:
1lkka_PU1_80-95
CI=0.11


[96-105 ]:
1lkka_PU1_96-105
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-33]:
1lkka_PU_1-33
CI=1.33


[34-61]:
1lkka_PU_34-61
CI=2.84


[62-79]:
1lkka_PU_62-79
CI=2.07


[80-95]:
1lkka_PU_80-95
CI=0.11


[96-105 ]:
1lkka_PU_96-105
CI=0.00