Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1lm4a_PU0_1-48
CI=0.39


[49-64]:
1lm4a_PU0_49-64
CI=1.59


[65-189 ]:
1lm4a_PU0_65-189
CI=4.44


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1lm4a_PU1_1-26
CI=0.07


[27-48]:
1lm4a_PU1_27-48
CI=0.00


[49-64]:
1lm4a_PU1_49-64
CI=1.59


[65-189 ]:
1lm4a_PU1_65-189
CI=4.44


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1lm4a_PU2_1-26
CI=0.07


[27-48]:
1lm4a_PU2_27-48
CI=0.00


[49-64]:
1lm4a_PU2_49-64
CI=1.59


[65-99]:
1lm4a_PU2_65-99
CI=3.32


[100-189 ]:
1lm4a_PU2_100-189
CI=3.61


Level 3
PU
Molecule needs Java 1.4 Structure


[1-26]:
1lm4a_PU3_1-26
CI=0.07


[27-48]:
1lm4a_PU3_27-48
CI=0.00


[49-64]:
1lm4a_PU3_49-64
CI=1.59


[65-99]:
1lm4a_PU3_65-99
CI=3.32


[100-130]:
1lm4a_PU3_100-130
CI=1.34


[131-168]:
1lm4a_PU3_131-168
CI=2.12


[169-189 ]:
1lm4a_PU3_169-189
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-26]:
1lm4a_PU_1-26
CI=0.07


[27-48]:
1lm4a_PU_27-48
CI=0.00


[49-64]:
1lm4a_PU_49-64
CI=1.59


[65-99]:
1lm4a_PU_65-99
CI=3.32


[100-130]:
1lm4a_PU_100-130
CI=1.34


[131-152]:
1lm4a_PU_131-152
CI=2.74


[153-168]:
1lm4a_PU_153-168
CI=0.11


[169-189 ]:
1lm4a_PU_169-189
CI=0.00