Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1lnia_PU0_1-19
CI=0.28


[20-55]:
1lnia_PU0_20-55
CI=1.78


[56-96 ]:
1lnia_PU0_56-96
CI=3.54


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1lnia_PU1_1-19
CI=0.28


[20-36]:
1lnia_PU1_20-36
CI=0.33


[37-55]:
1lnia_PU1_37-55
CI=1.16


[56-96 ]:
1lnia_PU1_56-96
CI=3.54


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1lnia_PU_1-19
CI=0.28


[20-36]:
1lnia_PU_20-36
CI=0.33


[37-55]:
1lnia_PU_37-55
CI=1.16


[56-72]:
1lnia_PU_56-72
CI=1.62


[73-96 ]:
1lnia_PU_73-96
CI=1.81