Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-66]:
1lq9a_PU0_1-66
CI=3.48


[67-90]:
1lq9a_PU0_67-90
CI=0.16


[91-112 ]:
1lq9a_PU0_91-112
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-24]:
1lq9a_PU_1-24
CI=0.31


[25-43]:
1lq9a_PU_25-43
CI=0.00


[44-66]:
1lq9a_PU_44-66
CI=3.19


[67-90]:
1lq9a_PU_67-90
CI=0.16


[91-112 ]:
1lq9a_PU_91-112
CI=0.00