Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-23]:
1lr0a_PU0_1-23
CI=0.00


[24-123 ]:
1lr0a_PU0_24-123
CI=3.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1lr0a_PU1_1-23
CI=0.00


[24-50]:
1lr0a_PU1_24-50
CI=0.00


[51-108]:
1lr0a_PU1_51-108
CI=3.31


[109-123 ]:
1lr0a_PU1_109-123
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1lr0a_PU2_1-23
CI=0.00


[24-50]:
1lr0a_PU2_24-50
CI=0.00


[51-92]:
1lr0a_PU2_51-92
CI=3.28


[93-108]:
1lr0a_PU2_93-108
CI=0.11


[109-123 ]:
1lr0a_PU2_109-123
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-23]:
1lr0a_PU_1-23
CI=0.00


[24-50]:
1lr0a_PU_24-50
CI=0.00


[51-70]:
1lr0a_PU_51-70
CI=2.90


[71-92]:
1lr0a_PU_71-92
CI=0.09


[93-108]:
1lr0a_PU_93-108
CI=0.11


[109-123 ]:
1lr0a_PU_109-123
CI=0.00