Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1lria_PU0_1-18
CI=0.00


[19-59]:
1lria_PU0_19-59
CI=2.22


[60-98 ]:
1lria_PU0_60-98
CI=2.10


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1lria_PU1_1-18
CI=0.00


[19-59]:
1lria_PU1_19-59
CI=2.22


[60-82]:
1lria_PU1_60-82
CI=0.91


[83-98 ]:
1lria_PU1_83-98
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-18]:
1lria_PU_1-18
CI=0.00


[19-41]:
1lria_PU_19-41
CI=0.48


[42-59]:
1lria_PU_42-59
CI=0.31


[60-82]:
1lria_PU_60-82
CI=0.91


[83-98 ]:
1lria_PU_83-98
CI=0.00