Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-71]:
1luqa_PU0_1-71
CI=4.47


[72-119 ]:
1luqa_PU0_72-119
CI=3.54


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1luqa_PU1_1-17
CI=2.29


[18-71]:
1luqa_PU1_18-71
CI=3.85


[72-119 ]:
1luqa_PU1_72-119
CI=3.54


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1luqa_PU2_1-17
CI=2.29


[18-71]:
1luqa_PU2_18-71
CI=3.85


[72-95]:
1luqa_PU2_72-95
CI=2.52


[96-119 ]:
1luqa_PU2_96-119
CI=0.71


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1luqa_PU_1-17
CI=2.29


[18-44]:
1luqa_PU_18-44
CI=2.60


[45-71]:
1luqa_PU_45-71
CI=1.05


[72-95]:
1luqa_PU_72-95
CI=2.52


[96-119 ]:
1luqa_PU_96-119
CI=0.71