Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU0_1-17
CI=0.10


[18-153]:
1lzla_PU0_18-153
CI=3.49


[154-317 ]:
1lzla_PU0_154-317
CI=4.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU1_1-17
CI=0.10


[18-42]:
1lzla_PU1_18-42
CI=0.53


[43-153]:
1lzla_PU1_43-153
CI=3.87


[154-317 ]:
1lzla_PU1_154-317
CI=4.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU2_1-17
CI=0.10


[18-42]:
1lzla_PU2_18-42
CI=0.53


[43-153]:
1lzla_PU2_43-153
CI=3.87


[154-191]:
1lzla_PU2_154-191
CI=4.24


[192-233]:
1lzla_PU2_192-233
CI=1.52


[234-317 ]:
1lzla_PU2_234-317
CI=2.52


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU3_1-17
CI=0.10


[18-42]:
1lzla_PU3_18-42
CI=0.53


[43-153]:
1lzla_PU3_43-153
CI=3.87


[154-191]:
1lzla_PU3_154-191
CI=4.24


[192-233]:
1lzla_PU3_192-233
CI=1.52


[234-289]:
1lzla_PU3_234-289
CI=3.19


[290-317 ]:
1lzla_PU3_290-317
CI=0.40


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU4_1-17
CI=0.10


[18-42]:
1lzla_PU4_18-42
CI=0.53


[43-153]:
1lzla_PU4_43-153
CI=3.87


[154-191]:
1lzla_PU4_154-191
CI=4.24


[192-216]:
1lzla_PU4_192-216
CI=1.19


[217-233]:
1lzla_PU4_217-233
CI=0.74


[234-289]:
1lzla_PU4_234-289
CI=3.19


[290-317 ]:
1lzla_PU4_290-317
CI=0.40


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU5_1-17
CI=0.10


[18-42]:
1lzla_PU5_18-42
CI=0.53


[43-135]:
1lzla_PU5_43-135
CI=3.92


[136-153]:
1lzla_PU5_136-153
CI=0.41


[154-191]:
1lzla_PU5_154-191
CI=4.24


[192-216]:
1lzla_PU5_192-216
CI=1.19


[217-233]:
1lzla_PU5_217-233
CI=0.74


[234-289]:
1lzla_PU5_234-289
CI=3.19


[290-317 ]:
1lzla_PU5_290-317
CI=0.40


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU6_1-17
CI=0.10


[18-42]:
1lzla_PU6_18-42
CI=0.53


[43-116]:
1lzla_PU6_43-116
CI=3.77


[117-135]:
1lzla_PU6_117-135
CI=0.88


[136-153]:
1lzla_PU6_136-153
CI=0.41


[154-191]:
1lzla_PU6_154-191
CI=4.24


[192-216]:
1lzla_PU6_192-216
CI=1.19


[217-233]:
1lzla_PU6_217-233
CI=0.74


[234-289]:
1lzla_PU6_234-289
CI=3.19


[290-317 ]:
1lzla_PU6_290-317
CI=0.40


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU7_1-17
CI=0.10


[18-42]:
1lzla_PU7_18-42
CI=0.53


[43-70]:
1lzla_PU7_43-70
CI=2.32


[71-116]:
1lzla_PU7_71-116
CI=2.55


[117-135]:
1lzla_PU7_117-135
CI=0.88


[136-153]:
1lzla_PU7_136-153
CI=0.41


[154-191]:
1lzla_PU7_154-191
CI=4.24


[192-216]:
1lzla_PU7_192-216
CI=1.19


[217-233]:
1lzla_PU7_217-233
CI=0.74


[234-289]:
1lzla_PU7_234-289
CI=3.19


[290-317 ]:
1lzla_PU7_290-317
CI=0.40


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU8_1-17
CI=0.10


[18-42]:
1lzla_PU8_18-42
CI=0.53


[43-70]:
1lzla_PU8_43-70
CI=2.32


[71-116]:
1lzla_PU8_71-116
CI=2.55


[117-135]:
1lzla_PU8_117-135
CI=0.88


[136-153]:
1lzla_PU8_136-153
CI=0.41


[154-191]:
1lzla_PU8_154-191
CI=4.24


[192-216]:
1lzla_PU8_192-216
CI=1.19


[217-233]:
1lzla_PU8_217-233
CI=0.74


[234-255]:
1lzla_PU8_234-255
CI=0.33


[256-289]:
1lzla_PU8_256-289
CI=2.06


[290-317 ]:
1lzla_PU8_290-317
CI=0.40


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU9_1-17
CI=0.10


[18-42]:
1lzla_PU9_18-42
CI=0.53


[43-70]:
1lzla_PU9_43-70
CI=2.32


[71-97]:
1lzla_PU9_71-97
CI=0.76


[98-116]:
1lzla_PU9_98-116
CI=0.78


[117-135]:
1lzla_PU9_117-135
CI=0.88


[136-153]:
1lzla_PU9_136-153
CI=0.41


[154-191]:
1lzla_PU9_154-191
CI=4.24


[192-216]:
1lzla_PU9_192-216
CI=1.19


[217-233]:
1lzla_PU9_217-233
CI=0.74


[234-255]:
1lzla_PU9_234-255
CI=0.33


[256-289]:
1lzla_PU9_256-289
CI=2.06


[290-317 ]:
1lzla_PU9_290-317
CI=0.40


Level 10
PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU10_1-17
CI=0.10


[18-42]:
1lzla_PU10_18-42
CI=0.53


[43-70]:
1lzla_PU10_43-70
CI=2.32


[71-97]:
1lzla_PU10_71-97
CI=0.76


[98-116]:
1lzla_PU10_98-116
CI=0.78


[117-135]:
1lzla_PU10_117-135
CI=0.88


[136-153]:
1lzla_PU10_136-153
CI=0.41


[154-191]:
1lzla_PU10_154-191
CI=4.24


[192-216]:
1lzla_PU10_192-216
CI=1.19


[217-233]:
1lzla_PU10_217-233
CI=0.74


[234-255]:
1lzla_PU10_234-255
CI=0.33


[256-272]:
1lzla_PU10_256-272
CI=0.11


[273-289]:
1lzla_PU10_273-289
CI=0.11


[290-317 ]:
1lzla_PU10_290-317
CI=0.40


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-17]:
1lzla_PU_1-17
CI=0.10


[18-42]:
1lzla_PU_18-42
CI=0.53


[43-70]:
1lzla_PU_43-70
CI=2.32


[71-97]:
1lzla_PU_71-97
CI=0.76


[98-116]:
1lzla_PU_98-116
CI=0.78


[117-135]:
1lzla_PU_117-135
CI=0.88


[136-153]:
1lzla_PU_136-153
CI=0.41


[154-170]:
1lzla_PU_154-170
CI=1.63


[171-191]:
1lzla_PU_171-191
CI=0.45


[192-216]:
1lzla_PU_192-216
CI=1.19


[217-233]:
1lzla_PU_217-233
CI=0.74


[234-255]:
1lzla_PU_234-255
CI=0.33


[256-272]:
1lzla_PU_256-272
CI=0.11


[273-289]:
1lzla_PU_273-289
CI=0.11


[290-317 ]:
1lzla_PU_290-317
CI=0.40