Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m15a_PU0_1-84
CI=2.59


[85-356 ]:
1m15a_PU0_85-356
CI=4.23


Level 1
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m15a_PU1_1-84
CI=2.59


[85-132]:
1m15a_PU1_85-132
CI=0.35


[133-225]:
1m15a_PU1_133-225
CI=2.71


[226-356 ]:
1m15a_PU1_226-356
CI=2.86


Level 2
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m15a_PU2_1-84
CI=2.59


[85-101]:
1m15a_PU2_85-101
CI=0.75


[102-132]:
1m15a_PU2_102-132
CI=0.12


[133-225]:
1m15a_PU2_133-225
CI=2.71


[226-356 ]:
1m15a_PU2_226-356
CI=2.86


Level 3
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m15a_PU3_1-84
CI=2.59


[85-101]:
1m15a_PU3_85-101
CI=0.75


[102-132]:
1m15a_PU3_102-132
CI=0.12


[133-225]:
1m15a_PU3_133-225
CI=2.71


[226-258]:
1m15a_PU3_226-258
CI=0.57


[259-356 ]:
1m15a_PU3_259-356
CI=3.49


Level 4
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m15a_PU4_1-84
CI=2.59


[85-101]:
1m15a_PU4_85-101
CI=0.75


[102-132]:
1m15a_PU4_102-132
CI=0.12


[133-172]:
1m15a_PU4_133-172
CI=0.60


[173-189]:
1m15a_PU4_173-189
CI=0.53


[190-225]:
1m15a_PU4_190-225
CI=1.58


[226-258]:
1m15a_PU4_226-258
CI=0.57


[259-356 ]:
1m15a_PU4_259-356
CI=3.49


Level 5
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m15a_PU5_1-84
CI=2.59


[85-101]:
1m15a_PU5_85-101
CI=0.75


[102-132]:
1m15a_PU5_102-132
CI=0.12


[133-150]:
1m15a_PU5_133-150
CI=0.30


[151-172]:
1m15a_PU5_151-172
CI=0.82


[173-189]:
1m15a_PU5_173-189
CI=0.53


[190-225]:
1m15a_PU5_190-225
CI=1.58


[226-258]:
1m15a_PU5_226-258
CI=0.57


[259-356 ]:
1m15a_PU5_259-356
CI=3.49


Level 6
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m15a_PU6_1-84
CI=2.59


[85-101]:
1m15a_PU6_85-101
CI=0.75


[102-132]:
1m15a_PU6_102-132
CI=0.12


[133-150]:
1m15a_PU6_133-150
CI=0.30


[151-172]:
1m15a_PU6_151-172
CI=0.82


[173-189]:
1m15a_PU6_173-189
CI=0.53


[190-225]:
1m15a_PU6_190-225
CI=1.58


[226-258]:
1m15a_PU6_226-258
CI=0.57


[259-277]:
1m15a_PU6_259-277
CI=2.06


[278-356 ]:
1m15a_PU6_278-356
CI=3.07


Level 7
PU
Molecule needs Java 1.4 Structure


[1-84]:
1m15a_PU7_1-84
CI=2.59


[85-101]:
1m15a_PU7_85-101
CI=0.75


[102-132]:
1m15a_PU7_102-132
CI=0.12


[133-150]:
1m15a_PU7_133-150
CI=0.30


[151-172]:
1m15a_PU7_151-172
CI=0.82


[173-189]:
1m15a_PU7_173-189
CI=0.53


[190-206]:
1m15a_PU7_190-206
CI=0.32


[207-225]:
1m15a_PU7_207-225
CI=2.06


[226-258]:
1m15a_PU7_226-258
CI=0.57


[259-277]:
1m15a_PU7_259-277
CI=2.06


[278-356 ]:
1m15a_PU7_278-356
CI=3.07


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1m15a_PU8_1-21
CI=0.00


[22-84]:
1m15a_PU8_22-84
CI=2.69


[85-101]:
1m15a_PU8_85-101
CI=0.75


[102-132]:
1m15a_PU8_102-132
CI=0.12


[133-150]:
1m15a_PU8_133-150
CI=0.30


[151-172]:
1m15a_PU8_151-172
CI=0.82


[173-189]:
1m15a_PU8_173-189
CI=0.53


[190-206]:
1m15a_PU8_190-206
CI=0.32


[207-225]:
1m15a_PU8_207-225
CI=2.06


[226-258]:
1m15a_PU8_226-258
CI=0.57


[259-277]:
1m15a_PU8_259-277
CI=2.06


[278-356 ]:
1m15a_PU8_278-356
CI=3.07


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-21]:
1m15a_PU_1-21
CI=0.00


[22-84]:
1m15a_PU_22-84
CI=2.69


[85-101]:
1m15a_PU_85-101
CI=0.75


[102-132]:
1m15a_PU_102-132
CI=0.12


[133-150]:
1m15a_PU_133-150
CI=0.30


[151-172]:
1m15a_PU_151-172
CI=0.82


[173-189]:
1m15a_PU_173-189
CI=0.53


[190-206]:
1m15a_PU_190-206
CI=0.32


[207-225]:
1m15a_PU_207-225
CI=2.06


[226-258]:
1m15a_PU_226-258
CI=0.57


[259-277]:
1m15a_PU_259-277
CI=2.06


[278-327]:
1m15a_PU_278-327
CI=3.07


[328-356 ]:
1m15a_PU_328-356
CI=0.13