Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-65]:
1m2da_PU0_1-65
CI=3.80


[66-101 ]:
1m2da_PU0_66-101
CI=1.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1m2da_PU1_1-24
CI=1.10


[25-50]:
1m2da_PU1_25-50
CI=0.79


[51-65]:
1m2da_PU1_51-65
CI=0.47


[66-101 ]:
1m2da_PU1_66-101
CI=1.64


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1m2da_PU_1-24
CI=1.10


[25-50]:
1m2da_PU_25-50
CI=0.79


[51-65]:
1m2da_PU_51-65
CI=0.47


[66-82]:
1m2da_PU_66-82
CI=0.00


[83-101 ]:
1m2da_PU_83-101
CI=0.79