Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1m48a_PU0_1-41
CI=0.04


[42-102]:
1m48a_PU0_42-102
CI=2.00


[103-123 ]:
1m48a_PU0_103-123
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1m48a_PU1_1-24
CI=0.00


[25-41]:
1m48a_PU1_25-41
CI=0.10


[42-102]:
1m48a_PU1_42-102
CI=2.00


[103-123 ]:
1m48a_PU1_103-123
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1m48a_PU_1-24
CI=0.00


[25-41]:
1m48a_PU_25-41
CI=0.10


[42-59]:
1m48a_PU_42-59
CI=1.01


[60-80]:
1m48a_PU_60-80
CI=0.80


[81-102]:
1m48a_PU_81-102
CI=0.00


[103-123 ]:
1m48a_PU_103-123
CI=0.00