Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-114]:
1m4ja_PU0_1-114
CI=3.86


[115-133 ]:
1m4ja_PU0_115-133
CI=1.17


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1m4ja_PU1_1-38
CI=2.72


[39-54]:
1m4ja_PU1_39-54
CI=0.23


[55-114]:
1m4ja_PU1_55-114
CI=3.30


[115-133 ]:
1m4ja_PU1_115-133
CI=1.17


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m4ja_PU2_1-19
CI=0.09


[20-38]:
1m4ja_PU2_20-38
CI=2.77


[39-54]:
1m4ja_PU2_39-54
CI=0.23


[55-114]:
1m4ja_PU2_55-114
CI=3.30


[115-133 ]:
1m4ja_PU2_115-133
CI=1.17


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1m4ja_PU3_1-19
CI=0.09


[20-38]:
1m4ja_PU3_20-38
CI=2.77


[39-54]:
1m4ja_PU3_39-54
CI=0.23


[55-96]:
1m4ja_PU3_55-96
CI=3.32


[97-114]:
1m4ja_PU3_97-114
CI=0.10


[115-133 ]:
1m4ja_PU3_115-133
CI=1.17


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1m4ja_PU_1-19
CI=0.09


[20-38]:
1m4ja_PU_20-38
CI=2.77


[39-54]:
1m4ja_PU_39-54
CI=0.23


[55-72]:
1m4ja_PU_55-72
CI=0.20


[73-96]:
1m4ja_PU_73-96
CI=0.45


[97-114]:
1m4ja_PU_97-114
CI=0.10


[115-133 ]:
1m4ja_PU_115-133
CI=1.17