Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-54]:
1m9za_PU0_1-54
CI=4.38


[55-70]:
1m9za_PU0_55-70
CI=0.79


[71-105 ]:
1m9za_PU0_71-105
CI=3.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-54]:
1m9za_PU1_1-54
CI=4.38


[55-70]:
1m9za_PU1_55-70
CI=0.79


[71-89]:
1m9za_PU1_71-89
CI=2.16


[90-105 ]:
1m9za_PU1_90-105
CI=0.12


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-28]:
1m9za_PU_1-28
CI=1.76


[29-54]:
1m9za_PU_29-54
CI=2.61


[55-70]:
1m9za_PU_55-70
CI=0.79


[71-89]:
1m9za_PU_71-89
CI=2.16


[90-105 ]:
1m9za_PU_90-105
CI=0.12