Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-59]:
1mai0_PU0_1-59
CI=3.05


[60-119 ]:
1mai0_PU0_60-119
CI=3.62


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mai0_PU1_1-32
CI=2.21


[33-59]:
1mai0_PU1_33-59
CI=1.91


[60-119 ]:
1mai0_PU1_60-119
CI=3.62


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1mai0_PU2_1-32
CI=2.21


[33-59]:
1mai0_PU2_33-59
CI=1.91


[60-100]:
1mai0_PU2_60-100
CI=3.72


[101-119 ]:
1mai0_PU2_101-119
CI=0.29


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1mai0_PU_1-32
CI=2.21


[33-59]:
1mai0_PU_33-59
CI=1.91


[60-80]:
1mai0_PU_60-80
CI=0.51


[81-100]:
1mai0_PU_81-100
CI=2.07


[101-119 ]:
1mai0_PU_101-119
CI=0.29