Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1md6a_PU0_1-39
CI=2.11


[40-117]:
1md6a_PU0_40-117
CI=4.54


[118-154 ]:
1md6a_PU0_118-154
CI=2.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1md6a_PU1_1-39
CI=2.11


[40-60]:
1md6a_PU1_40-60
CI=2.14


[61-92]:
1md6a_PU1_61-92
CI=2.22


[93-117]:
1md6a_PU1_93-117
CI=2.72


[118-154 ]:
1md6a_PU1_118-154
CI=2.72


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1md6a_PU2_1-39
CI=2.11


[40-60]:
1md6a_PU2_40-60
CI=2.14


[61-92]:
1md6a_PU2_61-92
CI=2.22


[93-117]:
1md6a_PU2_93-117
CI=2.72


[118-134]:
1md6a_PU2_118-134
CI=2.52


[135-154 ]:
1md6a_PU2_135-154
CI=0.27


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1md6a_PU_1-20
CI=0.66


[21-39]:
1md6a_PU_21-39
CI=0.00


[40-60]:
1md6a_PU_40-60
CI=2.14


[61-92]:
1md6a_PU_61-92
CI=2.22


[93-117]:
1md6a_PU_93-117
CI=2.72


[118-134]:
1md6a_PU_118-134
CI=2.52


[135-154 ]:
1md6a_PU_135-154
CI=0.27