Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1mg7a_PU0_1-44
CI=1.18


[45-147]:
1mg7a_PU0_45-147
CI=2.49


[148-351 ]:
1mg7a_PU0_148-351
CI=3.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU1_1-25
CI=0.00


[26-44]:
1mg7a_PU1_26-44
CI=2.65


[45-147]:
1mg7a_PU1_45-147
CI=2.49


[148-351 ]:
1mg7a_PU1_148-351
CI=3.36


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU2_1-25
CI=0.00


[26-44]:
1mg7a_PU2_26-44
CI=2.65


[45-128]:
1mg7a_PU2_45-128
CI=2.78


[129-147]:
1mg7a_PU2_129-147
CI=0.00


[148-351 ]:
1mg7a_PU2_148-351
CI=3.36


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU3_1-25
CI=0.00


[26-44]:
1mg7a_PU3_26-44
CI=2.65


[45-128]:
1mg7a_PU3_45-128
CI=2.78


[129-147]:
1mg7a_PU3_129-147
CI=0.00


[148-178]:
1mg7a_PU3_148-178
CI=1.77


[179-319]:
1mg7a_PU3_179-319
CI=3.11


[320-351 ]:
1mg7a_PU3_320-351
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU4_1-25
CI=0.00


[26-44]:
1mg7a_PU4_26-44
CI=2.65


[45-128]:
1mg7a_PU4_45-128
CI=2.78


[129-147]:
1mg7a_PU4_129-147
CI=0.00


[148-178]:
1mg7a_PU4_148-178
CI=1.77


[179-203]:
1mg7a_PU4_179-203
CI=0.00


[204-230]:
1mg7a_PU4_204-230
CI=0.84


[231-319]:
1mg7a_PU4_231-319
CI=2.34


[320-351 ]:
1mg7a_PU4_320-351
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU5_1-25
CI=0.00


[26-44]:
1mg7a_PU5_26-44
CI=2.65


[45-128]:
1mg7a_PU5_45-128
CI=2.78


[129-147]:
1mg7a_PU5_129-147
CI=0.00


[148-178]:
1mg7a_PU5_148-178
CI=1.77


[179-203]:
1mg7a_PU5_179-203
CI=0.00


[204-230]:
1mg7a_PU5_204-230
CI=0.84


[231-286]:
1mg7a_PU5_231-286
CI=2.55


[287-319]:
1mg7a_PU5_287-319
CI=0.51


[320-351 ]:
1mg7a_PU5_320-351
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU6_1-25
CI=0.00


[26-44]:
1mg7a_PU6_26-44
CI=2.65


[45-99]:
1mg7a_PU6_45-99
CI=2.63


[100-128]:
1mg7a_PU6_100-128
CI=0.78


[129-147]:
1mg7a_PU6_129-147
CI=0.00


[148-178]:
1mg7a_PU6_148-178
CI=1.77


[179-203]:
1mg7a_PU6_179-203
CI=0.00


[204-230]:
1mg7a_PU6_204-230
CI=0.84


[231-286]:
1mg7a_PU6_231-286
CI=2.55


[287-319]:
1mg7a_PU6_287-319
CI=0.51


[320-351 ]:
1mg7a_PU6_320-351
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU7_1-25
CI=0.00


[26-44]:
1mg7a_PU7_26-44
CI=2.65


[45-99]:
1mg7a_PU7_45-99
CI=2.63


[100-128]:
1mg7a_PU7_100-128
CI=0.78


[129-147]:
1mg7a_PU7_129-147
CI=0.00


[148-178]:
1mg7a_PU7_148-178
CI=1.77


[179-203]:
1mg7a_PU7_179-203
CI=0.00


[204-230]:
1mg7a_PU7_204-230
CI=0.84


[231-286]:
1mg7a_PU7_231-286
CI=2.55


[287-303]:
1mg7a_PU7_287-303
CI=0.33


[304-319]:
1mg7a_PU7_304-319
CI=0.00


[320-351 ]:
1mg7a_PU7_320-351
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU8_1-25
CI=0.00


[26-44]:
1mg7a_PU8_26-44
CI=2.65


[45-99]:
1mg7a_PU8_45-99
CI=2.63


[100-128]:
1mg7a_PU8_100-128
CI=0.78


[129-147]:
1mg7a_PU8_129-147
CI=0.00


[148-178]:
1mg7a_PU8_148-178
CI=1.77


[179-203]:
1mg7a_PU8_179-203
CI=0.00


[204-230]:
1mg7a_PU8_204-230
CI=0.84


[231-249]:
1mg7a_PU8_231-249
CI=0.28


[250-286]:
1mg7a_PU8_250-286
CI=2.35


[287-303]:
1mg7a_PU8_287-303
CI=0.33


[304-319]:
1mg7a_PU8_304-319
CI=0.00


[320-351 ]:
1mg7a_PU8_320-351
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU9_1-25
CI=0.00


[26-44]:
1mg7a_PU9_26-44
CI=2.65


[45-99]:
1mg7a_PU9_45-99
CI=2.63


[100-128]:
1mg7a_PU9_100-128
CI=0.78


[129-147]:
1mg7a_PU9_129-147
CI=0.00


[148-178]:
1mg7a_PU9_148-178
CI=1.77


[179-203]:
1mg7a_PU9_179-203
CI=0.00


[204-230]:
1mg7a_PU9_204-230
CI=0.84


[231-249]:
1mg7a_PU9_231-249
CI=0.28


[250-267]:
1mg7a_PU9_250-267
CI=0.00


[268-286]:
1mg7a_PU9_268-286
CI=2.54


[287-303]:
1mg7a_PU9_287-303
CI=0.33


[304-319]:
1mg7a_PU9_304-319
CI=0.00


[320-351 ]:
1mg7a_PU9_320-351
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU10_1-25
CI=0.00


[26-44]:
1mg7a_PU10_26-44
CI=2.65


[45-63]:
1mg7a_PU10_45-63
CI=0.10


[64-99]:
1mg7a_PU10_64-99
CI=1.00


[100-128]:
1mg7a_PU10_100-128
CI=0.78


[129-147]:
1mg7a_PU10_129-147
CI=0.00


[148-178]:
1mg7a_PU10_148-178
CI=1.77


[179-203]:
1mg7a_PU10_179-203
CI=0.00


[204-230]:
1mg7a_PU10_204-230
CI=0.84


[231-249]:
1mg7a_PU10_231-249
CI=0.28


[250-267]:
1mg7a_PU10_250-267
CI=0.00


[268-286]:
1mg7a_PU10_268-286
CI=2.54


[287-303]:
1mg7a_PU10_287-303
CI=0.33


[304-319]:
1mg7a_PU10_304-319
CI=0.00


[320-351 ]:
1mg7a_PU10_320-351
CI=0.00


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-25]:
1mg7a_PU_1-25
CI=0.00


[26-44]:
1mg7a_PU_26-44
CI=2.65


[45-63]:
1mg7a_PU_45-63
CI=0.10


[64-80]:
1mg7a_PU_64-80
CI=0.31


[81-99]:
1mg7a_PU_81-99
CI=0.00


[100-128]:
1mg7a_PU_100-128
CI=0.78


[129-147]:
1mg7a_PU_129-147
CI=0.00


[148-178]:
1mg7a_PU_148-178
CI=1.77


[179-203]:
1mg7a_PU_179-203
CI=0.00


[204-230]:
1mg7a_PU_204-230
CI=0.84


[231-249]:
1mg7a_PU_231-249
CI=0.28


[250-267]:
1mg7a_PU_250-267
CI=0.00


[268-286]:
1mg7a_PU_268-286
CI=2.54


[287-303]:
1mg7a_PU_287-303
CI=0.33


[304-319]:
1mg7a_PU_304-319
CI=0.00


[320-351 ]:
1mg7a_PU_320-351
CI=0.00