Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1mjha_PU0_1-44
CI=1.86


[45-61]:
1mjha_PU0_45-61
CI=0.32


[62-143 ]:
1mjha_PU0_62-143
CI=1.85


Level 1
PU
Molecule needs Java 1.4 Structure


[1-44]:
1mjha_PU1_1-44
CI=1.86


[45-61]:
1mjha_PU1_45-61
CI=0.32


[62-87]:
1mjha_PU1_62-87
CI=0.64


[88-143 ]:
1mjha_PU1_88-143
CI=2.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-44]:
1mjha_PU2_1-44
CI=1.86


[45-61]:
1mjha_PU2_45-61
CI=0.32


[62-87]:
1mjha_PU2_62-87
CI=0.64


[88-108]:
1mjha_PU2_88-108
CI=0.08


[109-143 ]:
1mjha_PU2_109-143
CI=1.40


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1mjha_PU_1-27
CI=0.69


[28-44]:
1mjha_PU_28-44
CI=0.00


[45-61]:
1mjha_PU_45-61
CI=0.32


[62-87]:
1mjha_PU_62-87
CI=0.64


[88-108]:
1mjha_PU_88-108
CI=0.08


[109-143 ]:
1mjha_PU_109-143
CI=1.40