Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1mkia_PU0_1-56
CI=2.23


[57-185]:
1mkia_PU0_57-185
CI=3.12


[186-299 ]:
1mkia_PU0_186-299
CI=4.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1mkia_PU1_1-56
CI=2.23


[57-185]:
1mkia_PU1_57-185
CI=3.12


[186-221]:
1mkia_PU1_186-221
CI=1.69


[222-299 ]:
1mkia_PU1_222-299
CI=4.42


Level 2
PU
Molecule needs Java 1.4 Structure


[1-56]:
1mkia_PU2_1-56
CI=2.23


[57-185]:
1mkia_PU2_57-185
CI=3.12


[186-221]:
1mkia_PU2_186-221
CI=1.69


[222-251]:
1mkia_PU2_222-251
CI=2.00


[252-268]:
1mkia_PU2_252-268
CI=2.83


[269-299 ]:
1mkia_PU2_269-299
CI=1.40


Level 3
PU
Molecule needs Java 1.4 Structure


[1-56]:
1mkia_PU3_1-56
CI=2.23


[57-115]:
1mkia_PU3_57-115
CI=2.44


[116-138]:
1mkia_PU3_116-138
CI=0.82


[139-185]:
1mkia_PU3_139-185
CI=1.41


[186-221]:
1mkia_PU3_186-221
CI=1.69


[222-251]:
1mkia_PU3_222-251
CI=2.00


[252-268]:
1mkia_PU3_252-268
CI=2.83


[269-299 ]:
1mkia_PU3_269-299
CI=1.40


Level 4
PU
Molecule needs Java 1.4 Structure


[1-56]:
1mkia_PU4_1-56
CI=2.23


[57-74]:
1mkia_PU4_57-74
CI=0.51


[75-107]:
1mkia_PU4_75-107
CI=2.32


[108-115]:
1mkia_PU4_108-115
CI=0.00


[116-138]:
1mkia_PU4_116-138
CI=0.82


[139-185]:
1mkia_PU4_139-185
CI=1.41


[186-221]:
1mkia_PU4_186-221
CI=1.69


[222-251]:
1mkia_PU4_222-251
CI=2.00


[252-268]:
1mkia_PU4_252-268
CI=2.83


[269-299 ]:
1mkia_PU4_269-299
CI=1.40


Level 5
PU
Molecule needs Java 1.4 Structure


[1-33]:
1mkia_PU5_1-33
CI=0.86


[34-56]:
1mkia_PU5_34-56
CI=1.73


[57-74]:
1mkia_PU5_57-74
CI=0.51


[75-107]:
1mkia_PU5_75-107
CI=2.32


[108-115]:
1mkia_PU5_108-115
CI=0.00


[116-138]:
1mkia_PU5_116-138
CI=0.82


[139-185]:
1mkia_PU5_139-185
CI=1.41


[186-221]:
1mkia_PU5_186-221
CI=1.69


[222-251]:
1mkia_PU5_222-251
CI=2.00


[252-268]:
1mkia_PU5_252-268
CI=2.83


[269-299 ]:
1mkia_PU5_269-299
CI=1.40


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1mkia_PU6_1-17
CI=0.11


[18-33]:
1mkia_PU6_18-33
CI=1.48


[34-56]:
1mkia_PU6_34-56
CI=1.73


[57-74]:
1mkia_PU6_57-74
CI=0.51


[75-107]:
1mkia_PU6_75-107
CI=2.32


[108-115]:
1mkia_PU6_108-115
CI=0.00


[116-138]:
1mkia_PU6_116-138
CI=0.82


[139-185]:
1mkia_PU6_139-185
CI=1.41


[186-221]:
1mkia_PU6_186-221
CI=1.69


[222-251]:
1mkia_PU6_222-251
CI=2.00


[252-268]:
1mkia_PU6_252-268
CI=2.83


[269-299 ]:
1mkia_PU6_269-299
CI=1.40


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1mkia_PU7_1-17
CI=0.11


[18-33]:
1mkia_PU7_18-33
CI=1.48


[34-56]:
1mkia_PU7_34-56
CI=1.73


[57-74]:
1mkia_PU7_57-74
CI=0.51


[75-107]:
1mkia_PU7_75-107
CI=2.32


[108-115]:
1mkia_PU7_108-115
CI=0.00


[116-138]:
1mkia_PU7_116-138
CI=0.82


[139-155]:
1mkia_PU7_139-155
CI=0.00


[156-185]:
1mkia_PU7_156-185
CI=0.74


[186-221]:
1mkia_PU7_186-221
CI=1.69


[222-251]:
1mkia_PU7_222-251
CI=2.00


[252-268]:
1mkia_PU7_252-268
CI=2.83


[269-299 ]:
1mkia_PU7_269-299
CI=1.40


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1mkia_PU8_1-17
CI=0.11


[18-33]:
1mkia_PU8_18-33
CI=1.48


[34-56]:
1mkia_PU8_34-56
CI=1.73


[57-74]:
1mkia_PU8_57-74
CI=0.51


[75-107]:
1mkia_PU8_75-107
CI=2.32


[108-115]:
1mkia_PU8_108-115
CI=0.00


[116-138]:
1mkia_PU8_116-138
CI=0.82


[139-155]:
1mkia_PU8_139-155
CI=0.00


[156-185]:
1mkia_PU8_156-185
CI=0.74


[186-202]:
1mkia_PU8_186-202
CI=0.00


[203-221]:
1mkia_PU8_203-221
CI=0.69


[222-251]:
1mkia_PU8_222-251
CI=2.00


[252-268]:
1mkia_PU8_252-268
CI=2.83


[269-299 ]:
1mkia_PU8_269-299
CI=1.40


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1mkia_PU_1-17
CI=0.11


[18-33]:
1mkia_PU_18-33
CI=1.48


[34-56]:
1mkia_PU_34-56
CI=1.73


[57-74]:
1mkia_PU_57-74
CI=0.51


[75-91]:
1mkia_PU_75-91
CI=0.11


[92-107]:
1mkia_PU_92-107
CI=0.81


[108-115]:
1mkia_PU_108-115
CI=0.00


[116-138]:
1mkia_PU_116-138
CI=0.82


[139-155]:
1mkia_PU_139-155
CI=0.00


[156-185]:
1mkia_PU_156-185
CI=0.74


[186-202]:
1mkia_PU_186-202
CI=0.00


[203-221]:
1mkia_PU_203-221
CI=0.69


[222-251]:
1mkia_PU_222-251
CI=2.00


[252-268]:
1mkia_PU_252-268
CI=2.83


[269-299 ]:
1mkia_PU_269-299
CI=1.40