Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-28]:
1mn8a_PU0_1-28
CI=0.67


[29-81]:
1mn8a_PU0_29-81
CI=2.30


[82-95 ]:
1mn8a_PU0_82-95
CI=0.25


Level 1
PU
Molecule needs Java 1.4 Structure


[1-28]:
1mn8a_PU1_1-28
CI=0.67


[29-62]:
1mn8a_PU1_29-62
CI=1.78


[63-81]:
1mn8a_PU1_63-81
CI=1.75


[82-95 ]:
1mn8a_PU1_82-95
CI=0.25


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-28]:
1mn8a_PU_1-28
CI=0.67


[29-45]:
1mn8a_PU_29-45
CI=0.00


[46-62]:
1mn8a_PU_46-62
CI=1.30


[63-81]:
1mn8a_PU_63-81
CI=1.75


[82-95 ]:
1mn8a_PU_82-95
CI=0.25