Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-230]:
1mpga_PU0_1-230
CI=3.54


[231-282 ]:
1mpga_PU0_231-282
CI=2.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-86]:
1mpga_PU1_1-86
CI=3.12


[87-103]:
1mpga_PU1_87-103
CI=0.43


[104-230]:
1mpga_PU1_104-230
CI=2.54


[231-282 ]:
1mpga_PU1_231-282
CI=2.05


Level 2
PU
Molecule needs Java 1.4 Structure


[1-86]:
1mpga_PU2_1-86
CI=3.12


[87-103]:
1mpga_PU2_87-103
CI=0.43


[104-135]:
1mpga_PU2_104-135
CI=0.41


[136-193]:
1mpga_PU2_136-193
CI=1.95


[194-230]:
1mpga_PU2_194-230
CI=1.13


[231-282 ]:
1mpga_PU2_231-282
CI=2.05


Level 3
PU
Molecule needs Java 1.4 Structure


[1-86]:
1mpga_PU3_1-86
CI=3.12


[87-103]:
1mpga_PU3_87-103
CI=0.43


[104-135]:
1mpga_PU3_104-135
CI=0.41


[136-156]:
1mpga_PU3_136-156
CI=2.22


[157-193]:
1mpga_PU3_157-193
CI=1.33


[194-230]:
1mpga_PU3_194-230
CI=1.13


[231-282 ]:
1mpga_PU3_231-282
CI=2.05


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mpga_PU4_1-16
CI=0.00


[17-32]:
1mpga_PU4_17-32
CI=1.01


[33-86]:
1mpga_PU4_33-86
CI=2.60


[87-103]:
1mpga_PU4_87-103
CI=0.43


[104-135]:
1mpga_PU4_104-135
CI=0.41


[136-156]:
1mpga_PU4_136-156
CI=2.22


[157-193]:
1mpga_PU4_157-193
CI=1.33


[194-230]:
1mpga_PU4_194-230
CI=1.13


[231-282 ]:
1mpga_PU4_231-282
CI=2.05


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mpga_PU5_1-16
CI=0.00


[17-32]:
1mpga_PU5_17-32
CI=1.01


[33-70]:
1mpga_PU5_33-70
CI=3.23


[71-86]:
1mpga_PU5_71-86
CI=0.23


[87-103]:
1mpga_PU5_87-103
CI=0.43


[104-135]:
1mpga_PU5_104-135
CI=0.41


[136-156]:
1mpga_PU5_136-156
CI=2.22


[157-193]:
1mpga_PU5_157-193
CI=1.33


[194-230]:
1mpga_PU5_194-230
CI=1.13


[231-282 ]:
1mpga_PU5_231-282
CI=2.05


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mpga_PU6_1-16
CI=0.00


[17-32]:
1mpga_PU6_17-32
CI=1.01


[33-70]:
1mpga_PU6_33-70
CI=3.23


[71-86]:
1mpga_PU6_71-86
CI=0.23


[87-103]:
1mpga_PU6_87-103
CI=0.43


[104-135]:
1mpga_PU6_104-135
CI=0.41


[136-156]:
1mpga_PU6_136-156
CI=2.22


[157-193]:
1mpga_PU6_157-193
CI=1.33


[194-230]:
1mpga_PU6_194-230
CI=1.13


[231-258]:
1mpga_PU6_231-258
CI=0.93


[259-282 ]:
1mpga_PU6_259-282
CI=0.16


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1mpga_PU7_1-16
CI=0.00


[17-32]:
1mpga_PU7_17-32
CI=1.01


[33-70]:
1mpga_PU7_33-70
CI=3.23


[71-86]:
1mpga_PU7_71-86
CI=0.23


[87-103]:
1mpga_PU7_87-103
CI=0.43


[104-135]:
1mpga_PU7_104-135
CI=0.41


[136-156]:
1mpga_PU7_136-156
CI=2.22


[157-193]:
1mpga_PU7_157-193
CI=1.33


[194-214]:
1mpga_PU7_194-214
CI=0.26


[215-230]:
1mpga_PU7_215-230
CI=0.12


[231-258]:
1mpga_PU7_231-258
CI=0.93


[259-282 ]:
1mpga_PU7_259-282
CI=0.16


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1mpga_PU_1-16
CI=0.00


[17-32]:
1mpga_PU_17-32
CI=1.01


[33-70]:
1mpga_PU_33-70
CI=3.23


[71-86]:
1mpga_PU_71-86
CI=0.23


[87-103]:
1mpga_PU_87-103
CI=0.43


[104-135]:
1mpga_PU_104-135
CI=0.41


[136-156]:
1mpga_PU_136-156
CI=2.22


[157-176]:
1mpga_PU_157-176
CI=0.28


[177-193]:
1mpga_PU_177-193
CI=0.00


[194-214]:
1mpga_PU_194-214
CI=0.26


[215-230]:
1mpga_PU_215-230
CI=0.12


[231-258]:
1mpga_PU_231-258
CI=0.93


[259-282 ]:
1mpga_PU_259-282
CI=0.16