Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-80]:
1muga_PU0_1-80
CI=3.37


[81-139]:
1muga_PU0_81-139
CI=2.88


[140-165 ]:
1muga_PU0_140-165
CI=0.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1muga_PU1_1-32
CI=1.46


[33-52]:
1muga_PU1_33-52
CI=0.93


[53-80]:
1muga_PU1_53-80
CI=0.33


[81-139]:
1muga_PU1_81-139
CI=2.88


[140-165 ]:
1muga_PU1_140-165
CI=0.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1muga_PU2_1-32
CI=1.46


[33-52]:
1muga_PU2_33-52
CI=0.93


[53-80]:
1muga_PU2_53-80
CI=0.33


[81-100]:
1muga_PU2_81-100
CI=0.00


[101-139]:
1muga_PU2_101-139
CI=3.29


[140-165 ]:
1muga_PU2_140-165
CI=0.22


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1muga_PU_1-32
CI=1.46


[33-52]:
1muga_PU_33-52
CI=0.93


[53-80]:
1muga_PU_53-80
CI=0.33


[81-100]:
1muga_PU_81-100
CI=0.00


[101-121]:
1muga_PU_101-121
CI=0.53


[122-139]:
1muga_PU_122-139
CI=2.26


[140-165 ]:
1muga_PU_140-165
CI=0.22